miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11446 5' -53.9 NC_003085.1 + 13831 0.66 0.786109
Target:  5'- aCGUgcAGACGccGCC-CAGGGAAGUGccggaugugcGGCa -3'
miRNA:   3'- aGCA--UCUGC--CGGaGUUCCUUCGC----------UCG- -5'
11446 5' -53.9 NC_003085.1 + 13547 0.66 0.786109
Target:  5'- ----cGACGGgUUCAGcaccGAGGCGAGCa -3'
miRNA:   3'- agcauCUGCCgGAGUUc---CUUCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 16124 0.66 0.786109
Target:  5'- cUCGUAGcAUGGCCUucCGGGGAAaCGGaacGCc -3'
miRNA:   3'- -AGCAUC-UGCCGGA--GUUCCUUcGCU---CG- -5'
11446 5' -53.9 NC_003085.1 + 46194 0.66 0.786109
Target:  5'- aUCGUAGGCuccauGCCcgcUCAuGGcGGGCGAGUg -3'
miRNA:   3'- -AGCAUCUGc----CGG---AGUuCC-UUCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 10169 0.66 0.786109
Target:  5'- gUCGUAGuugGCGagacaccgcagcGCCguaGAGGAGGCGcGCa -3'
miRNA:   3'- -AGCAUC---UGC------------CGGag-UUCCUUCGCuCG- -5'
11446 5' -53.9 NC_003085.1 + 38981 0.66 0.78108
Target:  5'- gUCGgugAGACGGCCccgcagauucgagCccgcuacgucgcgGAGGAGGCGAcgGCa -3'
miRNA:   3'- -AGCa--UCUGCCGGa------------G-------------UUCCUUCGCU--CG- -5'
11446 5' -53.9 NC_003085.1 + 29396 0.66 0.77601
Target:  5'- gCGUGGaaGCGGaugucccgcuCCagGAGGgcGCGGGCg -3'
miRNA:   3'- aGCAUC--UGCC----------GGagUUCCuuCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 28605 0.66 0.77601
Target:  5'- -gGUGGGCGGCaccgCAGc--GGCGAGCu -3'
miRNA:   3'- agCAUCUGCCGga--GUUccuUCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 4391 0.66 0.77295
Target:  5'- gUUGUGGACGgcggauaccggacaGCCggcgGAGGAGGCuGGCg -3'
miRNA:   3'- -AGCAUCUGC--------------CGGag--UUCCUUCGcUCG- -5'
11446 5' -53.9 NC_003085.1 + 32395 0.66 0.76782
Target:  5'- gUGUGGGCGGCCguacuucUCGAcgcccucgaagcuccGGAGguuggcgucauacGCGAGCa -3'
miRNA:   3'- aGCAUCUGCCGG-------AGUU---------------CCUU-------------CGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 21808 0.66 0.765758
Target:  5'- cCGUAGucgguggcgauGCGGCgUCccgcuGGcGGCGAGCc -3'
miRNA:   3'- aGCAUC-----------UGCCGgAGuu---CCuUCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 47149 0.66 0.765758
Target:  5'- ----cGGCGGCCgguggCGAGGcAGGCcAGCg -3'
miRNA:   3'- agcauCUGCCGGa----GUUCC-UUCGcUCG- -5'
11446 5' -53.9 NC_003085.1 + 30108 0.66 0.755364
Target:  5'- gUCGaGGAUGGCCUUAGGcaccuGcCGGGCc -3'
miRNA:   3'- -AGCaUCUGCCGGAGUUCcuu--C-GCUCG- -5'
11446 5' -53.9 NC_003085.1 + 19345 0.66 0.755364
Target:  5'- gCGgcGGAUGGCgUCcguguaGAGGAGGCGgccGGCg -3'
miRNA:   3'- aGCa-UCUGCCGgAG------UUCCUUCGC---UCG- -5'
11446 5' -53.9 NC_003085.1 + 31158 0.66 0.744841
Target:  5'- ---cGGACGGCCagCGccGggGCGuGCa -3'
miRNA:   3'- agcaUCUGCCGGa-GUucCuuCGCuCG- -5'
11446 5' -53.9 NC_003085.1 + 35033 0.66 0.744841
Target:  5'- cCGUAGAgGGCCagcccUCGcGGAgcaucuccaaGGCGAuGCg -3'
miRNA:   3'- aGCAUCUgCCGG-----AGUuCCU----------UCGCU-CG- -5'
11446 5' -53.9 NC_003085.1 + 34911 0.66 0.744841
Target:  5'- gCGUGG-CGGCCUaCGAGuGguGCaGGCg -3'
miRNA:   3'- aGCAUCuGCCGGA-GUUC-CuuCGcUCG- -5'
11446 5' -53.9 NC_003085.1 + 40863 0.66 0.744841
Target:  5'- --cUGGA-GGCCagcguggaCAAGGAGGUGGGCa -3'
miRNA:   3'- agcAUCUgCCGGa-------GUUCCUUCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 36582 0.66 0.7342
Target:  5'- aCG-GGA-GGCUUCGAGG--GCGGGCa -3'
miRNA:   3'- aGCaUCUgCCGGAGUUCCuuCGCUCG- -5'
11446 5' -53.9 NC_003085.1 + 5806 0.66 0.7342
Target:  5'- uUCGUcGGAgCGGUgcgcaUCGGGGAGGCGucAGCc -3'
miRNA:   3'- -AGCA-UCU-GCCGg----AGUUCCUUCGC--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.