miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11447 3' -61 NC_003085.1 + 16326 0.66 0.434563
Target:  5'- -cCGGGaGUugGGCGAAGCGCUgucucUGGc -3'
miRNA:   3'- gcGCCCcCGugCCGCUUUGCGA-----GCCu -5'
11447 3' -61 NC_003085.1 + 114 0.66 0.429013
Target:  5'- gGCGGcGGGCccccaauguggggagAgGGCGGGACggaGCUgGGAg -3'
miRNA:   3'- gCGCC-CCCG---------------UgCCGCUUUG---CGAgCCU- -5'
11447 3' -61 NC_003085.1 + 3678 0.66 0.425336
Target:  5'- gGCaGGGacGGCGCGGCGAGuccugacgccGCGUcCGGu -3'
miRNA:   3'- gCG-CCC--CCGUGCCGCUU----------UGCGaGCCu -5'
11447 3' -61 NC_003085.1 + 33249 0.66 0.425336
Target:  5'- cCGCGaugaGGaGCACGGCGAGgaGCGCggucaCGGc -3'
miRNA:   3'- -GCGCc---CC-CGUGCCGCUU--UGCGa----GCCu -5'
11447 3' -61 NC_003085.1 + 198 0.66 0.42442
Target:  5'- aGUGGacgcGGCGCGGCGAacucagucgggacGACGUcaugCGGAc -3'
miRNA:   3'- gCGCCc---CCGUGCCGCU-------------UUGCGa---GCCU- -5'
11447 3' -61 NC_003085.1 + 4107 0.66 0.416227
Target:  5'- cCGCuGGaGUugGGCGccGCGCUgGGAc -3'
miRNA:   3'- -GCGcCCcCGugCCGCuuUGCGAgCCU- -5'
11447 3' -61 NC_003085.1 + 10156 0.66 0.416227
Target:  5'- gGCGGGGaGUACcGCGAGGacCGggCGGAc -3'
miRNA:   3'- gCGCCCC-CGUGcCGCUUU--GCgaGCCU- -5'
11447 3' -61 NC_003085.1 + 44991 0.66 0.413518
Target:  5'- --gGGcGGGCACGGCGAAccccggagaacaguGCGCcgaCGGc -3'
miRNA:   3'- gcgCC-CCCGUGCCGCUU--------------UGCGa--GCCu -5'
11447 3' -61 NC_003085.1 + 47357 0.66 0.393112
Target:  5'- uGUGGGcgccgauggcgccgaGGUGCGGCGGcuGCGCUCGu- -3'
miRNA:   3'- gCGCCC---------------CCGUGCCGCUu-UGCGAGCcu -5'
11447 3' -61 NC_003085.1 + 35335 0.66 0.389631
Target:  5'- cCGCGGGcaGCACGGUGAugccGugGCagUGGGc -3'
miRNA:   3'- -GCGCCCc-CGUGCCGCU----UugCGa-GCCU- -5'
11447 3' -61 NC_003085.1 + 30350 0.66 0.387897
Target:  5'- uCGCGGGGcGCacuGCGGCGucuagcauccCGCcCGGGc -3'
miRNA:   3'- -GCGCCCC-CG---UGCCGCuuu-------GCGaGCCU- -5'
11447 3' -61 NC_003085.1 + 22482 0.67 0.381016
Target:  5'- -aUGGaGGGCACGGUGGcGACGgaCGGc -3'
miRNA:   3'- gcGCC-CCCGUGCCGCU-UUGCgaGCCu -5'
11447 3' -61 NC_003085.1 + 26706 0.67 0.381016
Target:  5'- cCGCGGcGGGCGucguCGGCGcGggUG-UCGGAg -3'
miRNA:   3'- -GCGCC-CCCGU----GCCGC-UuuGCgAGCCU- -5'
11447 3' -61 NC_003085.1 + 26717 0.67 0.364171
Target:  5'- gCGCaGGGcGGUgACGGCGcgGCGC-CGGu -3'
miRNA:   3'- -GCG-CCC-CCG-UGCCGCuuUGCGaGCCu -5'
11447 3' -61 NC_003085.1 + 20404 0.67 0.355945
Target:  5'- uCGCGGacacgccccaGGGCugGGCccAACGCUggcaGGAg -3'
miRNA:   3'- -GCGCC----------CCCGugCCGcuUUGCGAg---CCU- -5'
11447 3' -61 NC_003085.1 + 5268 0.67 0.355945
Target:  5'- gCGUGGuGGGUGCGcGaCGGGACGCccUGGAg -3'
miRNA:   3'- -GCGCC-CCCGUGC-C-GCUUUGCGa-GCCU- -5'
11447 3' -61 NC_003085.1 + 37653 0.67 0.344649
Target:  5'- aGCGucGGGGCAccCGGCGAuggggcagccgacACGCcCGGAg -3'
miRNA:   3'- gCGC--CCCCGU--GCCGCUu------------UGCGaGCCU- -5'
11447 3' -61 NC_003085.1 + 3098 0.67 0.339887
Target:  5'- cCGCGGaaGGCGCGGCuuGAggcGAUGCUCGa- -3'
miRNA:   3'- -GCGCCc-CCGUGCCG--CU---UUGCGAGCcu -5'
11447 3' -61 NC_003085.1 + 12291 0.67 0.339887
Target:  5'- aCGCGacGGCGCGGUGGucCGCUgGGu -3'
miRNA:   3'- -GCGCccCCGUGCCGCUuuGCGAgCCu -5'
11447 3' -61 NC_003085.1 + 48565 0.68 0.332057
Target:  5'- aGCGGGuuGGCACGG-GAuGCccCUCGGAc -3'
miRNA:   3'- gCGCCC--CCGUGCCgCUuUGc-GAGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.