Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11447 | 5' | -55.7 | NC_003085.1 | + | 30857 | 1.13 | 0.000434 |
Target: 5'- gUCUCGAAAGCUCACUUCGCCGCCCCCa -3' miRNA: 3'- -AGAGCUUUCGAGUGAAGCGGCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 17387 | 0.74 | 0.236457 |
Target: 5'- aCUCGccucGGCUCagguccgcauuGCUgucccccaggccacUCGCCGCCCCCa -3' miRNA: 3'- aGAGCuu--UCGAG-----------UGA--------------AGCGGCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 47087 | 0.74 | 0.238315 |
Target: 5'- cCUgCGAGAGCUCGCg-CGCCGCggCCUCg -3' miRNA: 3'- aGA-GCUUUCGAGUGaaGCGGCG--GGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 36223 | 0.74 | 0.257568 |
Target: 5'- gCUCGAacgucaucGAGUUgCACgucaUCGCCGCaCCCCg -3' miRNA: 3'- aGAGCU--------UUCGA-GUGa---AGCGGCG-GGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 38117 | 0.73 | 0.299862 |
Target: 5'- gUCUCGGAGGUgccgugagGC-UCGCCGCCCUg -3' miRNA: 3'- -AGAGCUUUCGag------UGaAGCGGCGGGGg -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 15271 | 0.72 | 0.339057 |
Target: 5'- --gCGGccGAGCUCACc-CGCCGCgCCCg -3' miRNA: 3'- agaGCU--UUCGAGUGaaGCGGCGgGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 40425 | 0.72 | 0.347329 |
Target: 5'- cUUCGGAGGCgCGCUgccUGCCGCCgUCCa -3' miRNA: 3'- aGAGCUUUCGaGUGAa--GCGGCGG-GGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 16251 | 0.7 | 0.418563 |
Target: 5'- cCUCGu--GCUgCGC--CGCCGCCUCCa -3' miRNA: 3'- aGAGCuuuCGA-GUGaaGCGGCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 38629 | 0.7 | 0.418563 |
Target: 5'- -gUCGGGAcGCUCAagccgcuggggUUUGCCGCCUCCa -3' miRNA: 3'- agAGCUUU-CGAGUg----------AAGCGGCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 12260 | 0.7 | 0.436741 |
Target: 5'- -aUUGAAGGC-CGCUggcgccgugaaacUgGCCGUCCCCg -3' miRNA: 3'- agAGCUUUCGaGUGA-------------AgCGGCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 49257 | 0.7 | 0.437711 |
Target: 5'- gUCcCGAcuGAGUUCGCcgCGCCGCgUCCa -3' miRNA: 3'- -AGaGCU--UUCGAGUGaaGCGGCGgGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 39702 | 0.7 | 0.447471 |
Target: 5'- gCUUGuGAAGCUCGCUUUccaaGCgCGCCCUg -3' miRNA: 3'- aGAGC-UUUCGAGUGAAG----CG-GCGGGGg -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 5919 | 0.7 | 0.457351 |
Target: 5'- aUCUCGcgcAAGCUgGacgCGCCGCCUUCg -3' miRNA: 3'- -AGAGCu--UUCGAgUgaaGCGGCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 36361 | 0.69 | 0.487669 |
Target: 5'- aUCUCGGGAGUuggcuugCACUUCGUcaugCGaCCUCCa -3' miRNA: 3'- -AGAGCUUUCGa------GUGAAGCG----GC-GGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 33095 | 0.69 | 0.505264 |
Target: 5'- --gCGGAGGCUCACUccuggguggcgcugUCGaaCGCUCCCu -3' miRNA: 3'- agaGCUUUCGAGUGA--------------AGCg-GCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 6582 | 0.69 | 0.508397 |
Target: 5'- cCUCGGc--CUCACccUCGacaCGCCCCCg -3' miRNA: 3'- aGAGCUuucGAGUGa-AGCg--GCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 26547 | 0.69 | 0.508397 |
Target: 5'- cCUCGGAGG---GCUUCGCCccggcaGCCUCCg -3' miRNA: 3'- aGAGCUUUCgagUGAAGCGG------CGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 36136 | 0.68 | 0.5189 |
Target: 5'- gCUCGGuacauggcGGGCUCGCUgaugauggUCGCCGaCCgCUCg -3' miRNA: 3'- aGAGCU--------UUCGAGUGA--------AGCGGC-GG-GGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 18355 | 0.68 | 0.529489 |
Target: 5'- gCUCGGgguuGAGC-CGC-UCGCCGCUuauggCCCg -3' miRNA: 3'- aGAGCU----UUCGaGUGaAGCGGCGG-----GGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 26505 | 0.68 | 0.529489 |
Target: 5'- aCUgGGccGGCUCguccgGCUUCGCCGUCgCCg -3' miRNA: 3'- aGAgCUu-UCGAG-----UGAAGCGGCGGgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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