miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11447 5' -55.7 NC_003085.1 + 38003 0.66 0.693249
Target:  5'- --gUGGGAcGCUCACaccgCGUCGgCCCCa -3'
miRNA:   3'- agaGCUUU-CGAGUGaa--GCGGCgGGGG- -5'
11447 5' -55.7 NC_003085.1 + 41626 0.67 0.583462
Target:  5'- cCUCGAAcauGGCcCagGCUUgGCCGCCgCUCa -3'
miRNA:   3'- aGAGCUU---UCGaG--UGAAgCGGCGG-GGG- -5'
11447 5' -55.7 NC_003085.1 + 23832 0.67 0.594411
Target:  5'- gUCagCGAGAGCcucggcccacUCGCUUC-CUgaGCCCCCa -3'
miRNA:   3'- -AGa-GCUUUCG----------AGUGAAGcGG--CGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 18621 0.67 0.626311
Target:  5'- cUUUCGAgacugcauccuccGAGCg--UUUCGCCguGCCCCCg -3'
miRNA:   3'- -AGAGCU-------------UUCGaguGAAGCGG--CGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 16901 0.67 0.627413
Target:  5'- --gCGAuGAGC-CACcUCGCaccccaGCCCCCg -3'
miRNA:   3'- agaGCU-UUCGaGUGaAGCGg-----CGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 20848 0.66 0.660451
Target:  5'- --cCGGcgccGAGCUCGCcgcugcggUGCCGCCCaCCc -3'
miRNA:   3'- agaGCU----UUCGAGUGaa------GCGGCGGG-GG- -5'
11447 5' -55.7 NC_003085.1 + 21217 0.66 0.671424
Target:  5'- gCUUGAGAGCUU-CUUC-CCGUgUCCg -3'
miRNA:   3'- aGAGCUUUCGAGuGAAGcGGCGgGGG- -5'
11447 5' -55.7 NC_003085.1 + 45778 0.66 0.671424
Target:  5'- --gCGGcgucAGGaCUCGCcgCGCCGUCCCUg -3'
miRNA:   3'- agaGCU----UUC-GAGUGaaGCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 27795 0.66 0.671424
Target:  5'- --cUGAu-GCUCACccgcgCGUCGCUCCCg -3'
miRNA:   3'- agaGCUuuCGAGUGaa---GCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 31963 0.67 0.583462
Target:  5'- cCUCGGcGGGCUgGCga--CUGCCCCCg -3'
miRNA:   3'- aGAGCU-UUCGAgUGaagcGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 41700 0.68 0.572554
Target:  5'- aUCUgGgcGGCUCGCUcaCGCUucacgGCCUCCa -3'
miRNA:   3'- -AGAgCuuUCGAGUGAa-GCGG-----CGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 46666 0.68 0.572554
Target:  5'- --cCGAGg---CGCUUCGCCGCCgCCu -3'
miRNA:   3'- agaGCUUucgaGUGAAGCGGCGGgGG- -5'
11447 5' -55.7 NC_003085.1 + 15271 0.72 0.339057
Target:  5'- --gCGGccGAGCUCACc-CGCCGCgCCCg -3'
miRNA:   3'- agaGCU--UUCGAGUGaaGCGGCGgGGG- -5'
11447 5' -55.7 NC_003085.1 + 40425 0.72 0.347329
Target:  5'- cUUCGGAGGCgCGCUgccUGCCGCCgUCCa -3'
miRNA:   3'- aGAGCUUUCGaGUGAa--GCGGCGG-GGG- -5'
11447 5' -55.7 NC_003085.1 + 16251 0.7 0.418563
Target:  5'- cCUCGu--GCUgCGC--CGCCGCCUCCa -3'
miRNA:   3'- aGAGCuuuCGA-GUGaaGCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 38629 0.7 0.418563
Target:  5'- -gUCGGGAcGCUCAagccgcuggggUUUGCCGCCUCCa -3'
miRNA:   3'- agAGCUUU-CGAGUg----------AAGCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 36361 0.69 0.487669
Target:  5'- aUCUCGGGAGUuggcuugCACUUCGUcaugCGaCCUCCa -3'
miRNA:   3'- -AGAGCUUUCGa------GUGAAGCG----GC-GGGGG- -5'
11447 5' -55.7 NC_003085.1 + 33095 0.69 0.505264
Target:  5'- --gCGGAGGCUCACUccuggguggcgcugUCGaaCGCUCCCu -3'
miRNA:   3'- agaGCUUUCGAGUGA--------------AGCg-GCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 36136 0.68 0.5189
Target:  5'- gCUCGGuacauggcGGGCUCGCUgaugauggUCGCCGaCCgCUCg -3'
miRNA:   3'- aGAGCU--------UUCGAGUGA--------AGCGGC-GG-GGG- -5'
11447 5' -55.7 NC_003085.1 + 3314 0.68 0.572554
Target:  5'- aCUCGGGAcGCUgauucaggCGCUggUCGCCGCacagacgacgcuCCCCg -3'
miRNA:   3'- aGAGCUUU-CGA--------GUGA--AGCGGCG------------GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.