miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11447 5' -55.7 NC_003085.1 + 3314 0.68 0.572554
Target:  5'- aCUCGGGAcGCUgauucaggCGCUggUCGCCGCacagacgacgcuCCCCg -3'
miRNA:   3'- aGAGCUUU-CGA--------GUGA--AGCGGCG------------GGGG- -5'
11447 5' -55.7 NC_003085.1 + 11248 0.68 0.529489
Target:  5'- -gUCGAGAGUgCACgagccacCGCCGCCCg- -3'
miRNA:   3'- agAGCUUUCGaGUGaa-----GCGGCGGGgg -5'
11447 5' -55.7 NC_003085.1 + 18355 0.68 0.529489
Target:  5'- gCUCGGgguuGAGC-CGC-UCGCCGCUuauggCCCg -3'
miRNA:   3'- aGAGCU----UUCGaGUGaAGCGGCGG-----GGG- -5'
11447 5' -55.7 NC_003085.1 + 26547 0.69 0.508397
Target:  5'- cCUCGGAGG---GCUUCGCCccggcaGCCUCCg -3'
miRNA:   3'- aGAGCUUUCgagUGAAGCGG------CGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 6582 0.69 0.508397
Target:  5'- cCUCGGc--CUCACccUCGacaCGCCCCCg -3'
miRNA:   3'- aGAGCUuucGAGUGa-AGCg--GCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 5919 0.7 0.457351
Target:  5'- aUCUCGcgcAAGCUgGacgCGCCGCCUUCg -3'
miRNA:   3'- -AGAGCu--UUCGAgUgaaGCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 39702 0.7 0.447471
Target:  5'- gCUUGuGAAGCUCGCUUUccaaGCgCGCCCUg -3'
miRNA:   3'- aGAGC-UUUCGAGUGAAG----CG-GCGGGGg -5'
11447 5' -55.7 NC_003085.1 + 49257 0.7 0.437711
Target:  5'- gUCcCGAcuGAGUUCGCcgCGCCGCgUCCa -3'
miRNA:   3'- -AGaGCU--UUCGAGUGaaGCGGCGgGGG- -5'
11447 5' -55.7 NC_003085.1 + 12260 0.7 0.436741
Target:  5'- -aUUGAAGGC-CGCUggcgccgugaaacUgGCCGUCCCCg -3'
miRNA:   3'- agAGCUUUCGaGUGA-------------AgCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 26505 0.68 0.529489
Target:  5'- aCUgGGccGGCUCguccgGCUUCGCCGUCgCCg -3'
miRNA:   3'- aGAgCUu-UCGAG-----UGAAGCGGCGGgGG- -5'
11447 5' -55.7 NC_003085.1 + 37356 0.68 0.550893
Target:  5'- cCUCGggGGCgUCcgACUUgCGCgCGUCaCCCg -3'
miRNA:   3'- aGAGCuuUCG-AG--UGAA-GCG-GCGG-GGG- -5'
11447 5' -55.7 NC_003085.1 + 30671 0.67 0.583462
Target:  5'- gUCUCGuc-GCUCAgCgacaGCCGCCUUCg -3'
miRNA:   3'- -AGAGCuuuCGAGU-Gaag-CGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 30857 1.13 0.000434
Target:  5'- gUCUCGAAAGCUCACUUCGCCGCCCCCa -3'
miRNA:   3'- -AGAGCUUUCGAGUGAAGCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 40318 0.66 0.682361
Target:  5'- --gCGGcGAGCUcCGCcaggUGCCGCUCCCa -3'
miRNA:   3'- agaGCU-UUCGA-GUGaa--GCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 7328 0.66 0.675804
Target:  5'- --aCGAGAGCauccgcgccgugcauUCGCUU-GCCGUCCuCCg -3'
miRNA:   3'- agaGCUUUCG---------------AGUGAAgCGGCGGG-GG- -5'
11447 5' -55.7 NC_003085.1 + 26328 0.66 0.671424
Target:  5'- gCUCG-AAGCUCugcgccgucuuGCggugcugCGCCGCCUCg -3'
miRNA:   3'- aGAGCuUUCGAG-----------UGaa-----GCGGCGGGGg -5'
11447 5' -55.7 NC_003085.1 + 37503 0.66 0.660451
Target:  5'- -------cGCUCACa--GCCGCCCCUc -3'
miRNA:   3'- agagcuuuCGAGUGaagCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 935 0.67 0.605392
Target:  5'- aCUgGAAGGCcCGCgcccUCGCCGCCg-- -3'
miRNA:   3'- aGAgCUUUCGaGUGa---AGCGGCGGggg -5'
11447 5' -55.7 NC_003085.1 + 35947 0.67 0.594411
Target:  5'- gCUUGcGGAGCUUcucgACgUUCGCCGCUgCCa -3'
miRNA:   3'- aGAGC-UUUCGAG----UG-AAGCGGCGGgGG- -5'
11447 5' -55.7 NC_003085.1 + 4904 0.67 0.594411
Target:  5'- cCUUGAGAcGCagUCACaUCGCgucCGCCCUCg -3'
miRNA:   3'- aGAGCUUU-CG--AGUGaAGCG---GCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.