miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11447 5' -55.7 NC_003085.1 + 26547 0.69 0.508397
Target:  5'- cCUCGGAGG---GCUUCGCCccggcaGCCUCCg -3'
miRNA:   3'- aGAGCUUUCgagUGAAGCGG------CGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 27795 0.66 0.671424
Target:  5'- --cUGAu-GCUCACccgcgCGUCGCUCCCg -3'
miRNA:   3'- agaGCUuuCGAGUGaa---GCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 30671 0.67 0.583462
Target:  5'- gUCUCGuc-GCUCAgCgacaGCCGCCUUCg -3'
miRNA:   3'- -AGAGCuuuCGAGU-Gaag-CGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 30857 1.13 0.000434
Target:  5'- gUCUCGAAAGCUCACUUCGCCGCCCCCa -3'
miRNA:   3'- -AGAGCUUUCGAGUGAAGCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 31963 0.67 0.583462
Target:  5'- cCUCGGcGGGCUgGCga--CUGCCCCCg -3'
miRNA:   3'- aGAGCU-UUCGAgUGaagcGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 33095 0.69 0.505264
Target:  5'- --gCGGAGGCUCACUccuggguggcgcugUCGaaCGCUCCCu -3'
miRNA:   3'- agaGCUUUCGAGUGA--------------AGCg-GCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 35947 0.67 0.594411
Target:  5'- gCUUGcGGAGCUUcucgACgUUCGCCGCUgCCa -3'
miRNA:   3'- aGAGC-UUUCGAG----UG-AAGCGGCGGgGG- -5'
11447 5' -55.7 NC_003085.1 + 36136 0.68 0.5189
Target:  5'- gCUCGGuacauggcGGGCUCGCUgaugauggUCGCCGaCCgCUCg -3'
miRNA:   3'- aGAGCU--------UUCGAGUGA--------AGCGGC-GG-GGG- -5'
11447 5' -55.7 NC_003085.1 + 36223 0.74 0.257568
Target:  5'- gCUCGAacgucaucGAGUUgCACgucaUCGCCGCaCCCCg -3'
miRNA:   3'- aGAGCU--------UUCGA-GUGa---AGCGGCG-GGGG- -5'
11447 5' -55.7 NC_003085.1 + 36361 0.69 0.487669
Target:  5'- aUCUCGGGAGUuggcuugCACUUCGUcaugCGaCCUCCa -3'
miRNA:   3'- -AGAGCUUUCGa------GUGAAGCG----GC-GGGGG- -5'
11447 5' -55.7 NC_003085.1 + 37356 0.68 0.550893
Target:  5'- cCUCGggGGCgUCcgACUUgCGCgCGUCaCCCg -3'
miRNA:   3'- aGAGCuuUCG-AG--UGAA-GCG-GCGG-GGG- -5'
11447 5' -55.7 NC_003085.1 + 37503 0.66 0.660451
Target:  5'- -------cGCUCACa--GCCGCCCCUc -3'
miRNA:   3'- agagcuuuCGAGUGaagCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 38003 0.66 0.693249
Target:  5'- --gUGGGAcGCUCACaccgCGUCGgCCCCa -3'
miRNA:   3'- agaGCUUU-CGAGUGaa--GCGGCgGGGG- -5'
11447 5' -55.7 NC_003085.1 + 38117 0.73 0.299862
Target:  5'- gUCUCGGAGGUgccgugagGC-UCGCCGCCCUg -3'
miRNA:   3'- -AGAGCUUUCGag------UGaAGCGGCGGGGg -5'
11447 5' -55.7 NC_003085.1 + 38629 0.7 0.418563
Target:  5'- -gUCGGGAcGCUCAagccgcuggggUUUGCCGCCUCCa -3'
miRNA:   3'- agAGCUUU-CGAGUg----------AAGCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 39702 0.7 0.447471
Target:  5'- gCUUGuGAAGCUCGCUUUccaaGCgCGCCCUg -3'
miRNA:   3'- aGAGC-UUUCGAGUGAAG----CG-GCGGGGg -5'
11447 5' -55.7 NC_003085.1 + 40318 0.66 0.682361
Target:  5'- --gCGGcGAGCUcCGCcaggUGCCGCUCCCa -3'
miRNA:   3'- agaGCU-UUCGA-GUGaa--GCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 40425 0.72 0.347329
Target:  5'- cUUCGGAGGCgCGCUgccUGCCGCCgUCCa -3'
miRNA:   3'- aGAGCUUUCGaGUGAa--GCGGCGG-GGG- -5'
11447 5' -55.7 NC_003085.1 + 41626 0.67 0.583462
Target:  5'- cCUCGAAcauGGCcCagGCUUgGCCGCCgCUCa -3'
miRNA:   3'- aGAGCUU---UCGaG--UGAAgCGGCGG-GGG- -5'
11447 5' -55.7 NC_003085.1 + 41700 0.68 0.572554
Target:  5'- aUCUgGgcGGCUCGCUcaCGCUucacgGCCUCCa -3'
miRNA:   3'- -AGAgCuuUCGAGUGAa-GCGG-----CGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.