miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11447 5' -55.7 NC_003085.1 + 935 0.67 0.605392
Target:  5'- aCUgGAAGGCcCGCgcccUCGCCGCCg-- -3'
miRNA:   3'- aGAgCUUUCGaGUGa---AGCGGCGGggg -5'
11447 5' -55.7 NC_003085.1 + 3314 0.68 0.572554
Target:  5'- aCUCGGGAcGCUgauucaggCGCUggUCGCCGCacagacgacgcuCCCCg -3'
miRNA:   3'- aGAGCUUU-CGA--------GUGA--AGCGGCG------------GGGG- -5'
11447 5' -55.7 NC_003085.1 + 4904 0.67 0.594411
Target:  5'- cCUUGAGAcGCagUCACaUCGCgucCGCCCUCg -3'
miRNA:   3'- aGAGCUUU-CG--AGUGaAGCG---GCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 5919 0.7 0.457351
Target:  5'- aUCUCGcgcAAGCUgGacgCGCCGCCUUCg -3'
miRNA:   3'- -AGAGCu--UUCGAgUgaaGCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 6582 0.69 0.508397
Target:  5'- cCUCGGc--CUCACccUCGacaCGCCCCCg -3'
miRNA:   3'- aGAGCUuucGAGUGa-AGCg--GCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 7328 0.66 0.675804
Target:  5'- --aCGAGAGCauccgcgccgugcauUCGCUU-GCCGUCCuCCg -3'
miRNA:   3'- agaGCUUUCG---------------AGUGAAgCGGCGGG-GG- -5'
11447 5' -55.7 NC_003085.1 + 11248 0.68 0.529489
Target:  5'- -gUCGAGAGUgCACgagccacCGCCGCCCg- -3'
miRNA:   3'- agAGCUUUCGaGUGaa-----GCGGCGGGgg -5'
11447 5' -55.7 NC_003085.1 + 12260 0.7 0.436741
Target:  5'- -aUUGAAGGC-CGCUggcgccgugaaacUgGCCGUCCCCg -3'
miRNA:   3'- agAGCUUUCGaGUGA-------------AgCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 15271 0.72 0.339057
Target:  5'- --gCGGccGAGCUCACc-CGCCGCgCCCg -3'
miRNA:   3'- agaGCU--UUCGAGUGaaGCGGCGgGGG- -5'
11447 5' -55.7 NC_003085.1 + 16251 0.7 0.418563
Target:  5'- cCUCGu--GCUgCGC--CGCCGCCUCCa -3'
miRNA:   3'- aGAGCuuuCGA-GUGaaGCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 16901 0.67 0.627413
Target:  5'- --gCGAuGAGC-CACcUCGCaccccaGCCCCCg -3'
miRNA:   3'- agaGCU-UUCGaGUGaAGCGg-----CGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 17387 0.74 0.236457
Target:  5'- aCUCGccucGGCUCagguccgcauuGCUgucccccaggccacUCGCCGCCCCCa -3'
miRNA:   3'- aGAGCuu--UCGAG-----------UGA--------------AGCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 18355 0.68 0.529489
Target:  5'- gCUCGGgguuGAGC-CGC-UCGCCGCUuauggCCCg -3'
miRNA:   3'- aGAGCU----UUCGaGUGaAGCGGCGG-----GGG- -5'
11447 5' -55.7 NC_003085.1 + 18621 0.67 0.626311
Target:  5'- cUUUCGAgacugcauccuccGAGCg--UUUCGCCguGCCCCCg -3'
miRNA:   3'- -AGAGCU-------------UUCGaguGAAGCGG--CGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 20209 0.66 0.693249
Target:  5'- aUUCGGAcugggcguugcGGUagGCcUCGCUGCCCUCg -3'
miRNA:   3'- aGAGCUU-----------UCGagUGaAGCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 20848 0.66 0.660451
Target:  5'- --cCGGcgccGAGCUCGCcgcugcggUGCCGCCCaCCc -3'
miRNA:   3'- agaGCU----UUCGAGUGaa------GCGGCGGG-GG- -5'
11447 5' -55.7 NC_003085.1 + 21217 0.66 0.671424
Target:  5'- gCUUGAGAGCUU-CUUC-CCGUgUCCg -3'
miRNA:   3'- aGAGCUUUCGAGuGAAGcGGCGgGGG- -5'
11447 5' -55.7 NC_003085.1 + 23832 0.67 0.594411
Target:  5'- gUCagCGAGAGCcucggcccacUCGCUUC-CUgaGCCCCCa -3'
miRNA:   3'- -AGa-GCUUUCG----------AGUGAAGcGG--CGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 26328 0.66 0.671424
Target:  5'- gCUCG-AAGCUCugcgccgucuuGCggugcugCGCCGCCUCg -3'
miRNA:   3'- aGAGCuUUCGAG-----------UGaa-----GCGGCGGGGg -5'
11447 5' -55.7 NC_003085.1 + 26505 0.68 0.529489
Target:  5'- aCUgGGccGGCUCguccgGCUUCGCCGUCgCCg -3'
miRNA:   3'- aGAgCUu-UCGAG-----UGAAGCGGCGGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.