Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11447 | 5' | -55.7 | NC_003085.1 | + | 49257 | 0.7 | 0.437711 |
Target: 5'- gUCcCGAcuGAGUUCGCcgCGCCGCgUCCa -3' miRNA: 3'- -AGaGCU--UUCGAGUGaaGCGGCGgGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 47087 | 0.74 | 0.238315 |
Target: 5'- cCUgCGAGAGCUCGCg-CGCCGCggCCUCg -3' miRNA: 3'- aGA-GCUUUCGAGUGaaGCGGCG--GGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 46666 | 0.68 | 0.572554 |
Target: 5'- --cCGAGg---CGCUUCGCCGCCgCCu -3' miRNA: 3'- agaGCUUucgaGUGAAGCGGCGGgGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 45778 | 0.66 | 0.671424 |
Target: 5'- --gCGGcgucAGGaCUCGCcgCGCCGUCCCUg -3' miRNA: 3'- agaGCU----UUC-GAGUGaaGCGGCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 41700 | 0.68 | 0.572554 |
Target: 5'- aUCUgGgcGGCUCGCUcaCGCUucacgGCCUCCa -3' miRNA: 3'- -AGAgCuuUCGAGUGAa-GCGG-----CGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 41626 | 0.67 | 0.583462 |
Target: 5'- cCUCGAAcauGGCcCagGCUUgGCCGCCgCUCa -3' miRNA: 3'- aGAGCUU---UCGaG--UGAAgCGGCGG-GGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 40425 | 0.72 | 0.347329 |
Target: 5'- cUUCGGAGGCgCGCUgccUGCCGCCgUCCa -3' miRNA: 3'- aGAGCUUUCGaGUGAa--GCGGCGG-GGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 40318 | 0.66 | 0.682361 |
Target: 5'- --gCGGcGAGCUcCGCcaggUGCCGCUCCCa -3' miRNA: 3'- agaGCU-UUCGA-GUGaa--GCGGCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 39702 | 0.7 | 0.447471 |
Target: 5'- gCUUGuGAAGCUCGCUUUccaaGCgCGCCCUg -3' miRNA: 3'- aGAGC-UUUCGAGUGAAG----CG-GCGGGGg -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 38629 | 0.7 | 0.418563 |
Target: 5'- -gUCGGGAcGCUCAagccgcuggggUUUGCCGCCUCCa -3' miRNA: 3'- agAGCUUU-CGAGUg----------AAGCGGCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 38117 | 0.73 | 0.299862 |
Target: 5'- gUCUCGGAGGUgccgugagGC-UCGCCGCCCUg -3' miRNA: 3'- -AGAGCUUUCGag------UGaAGCGGCGGGGg -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 38003 | 0.66 | 0.693249 |
Target: 5'- --gUGGGAcGCUCACaccgCGUCGgCCCCa -3' miRNA: 3'- agaGCUUU-CGAGUGaa--GCGGCgGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 37503 | 0.66 | 0.660451 |
Target: 5'- -------cGCUCACa--GCCGCCCCUc -3' miRNA: 3'- agagcuuuCGAGUGaagCGGCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 37356 | 0.68 | 0.550893 |
Target: 5'- cCUCGggGGCgUCcgACUUgCGCgCGUCaCCCg -3' miRNA: 3'- aGAGCuuUCG-AG--UGAA-GCG-GCGG-GGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 36361 | 0.69 | 0.487669 |
Target: 5'- aUCUCGGGAGUuggcuugCACUUCGUcaugCGaCCUCCa -3' miRNA: 3'- -AGAGCUUUCGa------GUGAAGCG----GC-GGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 36223 | 0.74 | 0.257568 |
Target: 5'- gCUCGAacgucaucGAGUUgCACgucaUCGCCGCaCCCCg -3' miRNA: 3'- aGAGCU--------UUCGA-GUGa---AGCGGCG-GGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 36136 | 0.68 | 0.5189 |
Target: 5'- gCUCGGuacauggcGGGCUCGCUgaugauggUCGCCGaCCgCUCg -3' miRNA: 3'- aGAGCU--------UUCGAGUGA--------AGCGGC-GG-GGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 35947 | 0.67 | 0.594411 |
Target: 5'- gCUUGcGGAGCUUcucgACgUUCGCCGCUgCCa -3' miRNA: 3'- aGAGC-UUUCGAG----UG-AAGCGGCGGgGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 33095 | 0.69 | 0.505264 |
Target: 5'- --gCGGAGGCUCACUccuggguggcgcugUCGaaCGCUCCCu -3' miRNA: 3'- agaGCUUUCGAGUGA--------------AGCg-GCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 31963 | 0.67 | 0.583462 |
Target: 5'- cCUCGGcGGGCUgGCga--CUGCCCCCg -3' miRNA: 3'- aGAGCU-UUCGAgUGaagcGGCGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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