Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11447 | 5' | -55.7 | NC_003085.1 | + | 20209 | 0.66 | 0.693249 |
Target: 5'- aUUCGGAcugggcguugcGGUagGCcUCGCUGCCCUCg -3' miRNA: 3'- aGAGCUU-----------UCGagUGaAGCGGCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 49257 | 0.7 | 0.437711 |
Target: 5'- gUCcCGAcuGAGUUCGCcgCGCCGCgUCCa -3' miRNA: 3'- -AGaGCU--UUCGAGUGaaGCGGCGgGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 36223 | 0.74 | 0.257568 |
Target: 5'- gCUCGAacgucaucGAGUUgCACgucaUCGCCGCaCCCCg -3' miRNA: 3'- aGAGCU--------UUCGA-GUGa---AGCGGCG-GGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 30857 | 1.13 | 0.000434 |
Target: 5'- gUCUCGAAAGCUCACUUCGCCGCCCCCa -3' miRNA: 3'- -AGAGCUUUCGAGUGAAGCGGCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 37503 | 0.66 | 0.660451 |
Target: 5'- -------cGCUCACa--GCCGCCCCUc -3' miRNA: 3'- agagcuuuCGAGUGaagCGGCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 935 | 0.67 | 0.605392 |
Target: 5'- aCUgGAAGGCcCGCgcccUCGCCGCCg-- -3' miRNA: 3'- aGAgCUUUCGaGUGa---AGCGGCGGggg -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 4904 | 0.67 | 0.594411 |
Target: 5'- cCUUGAGAcGCagUCACaUCGCgucCGCCCUCg -3' miRNA: 3'- aGAGCUUU-CG--AGUGaAGCG---GCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 30671 | 0.67 | 0.583462 |
Target: 5'- gUCUCGuc-GCUCAgCgacaGCCGCCUUCg -3' miRNA: 3'- -AGAGCuuuCGAGU-Gaag-CGGCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 11248 | 0.68 | 0.529489 |
Target: 5'- -gUCGAGAGUgCACgagccacCGCCGCCCg- -3' miRNA: 3'- agAGCUUUCGaGUGaa-----GCGGCGGGgg -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 39702 | 0.7 | 0.447471 |
Target: 5'- gCUUGuGAAGCUCGCUUUccaaGCgCGCCCUg -3' miRNA: 3'- aGAGC-UUUCGAGUGAAG----CG-GCGGGGg -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 26547 | 0.69 | 0.508397 |
Target: 5'- cCUCGGAGG---GCUUCGCCccggcaGCCUCCg -3' miRNA: 3'- aGAGCUUUCgagUGAAGCGG------CGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 26505 | 0.68 | 0.529489 |
Target: 5'- aCUgGGccGGCUCguccgGCUUCGCCGUCgCCg -3' miRNA: 3'- aGAgCUu-UCGAG-----UGAAGCGGCGGgGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 40318 | 0.66 | 0.682361 |
Target: 5'- --gCGGcGAGCUcCGCcaggUGCCGCUCCCa -3' miRNA: 3'- agaGCU-UUCGA-GUGaa--GCGGCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 6582 | 0.69 | 0.508397 |
Target: 5'- cCUCGGc--CUCACccUCGacaCGCCCCCg -3' miRNA: 3'- aGAGCUuucGAGUGa-AGCg--GCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 7328 | 0.66 | 0.675804 |
Target: 5'- --aCGAGAGCauccgcgccgugcauUCGCUU-GCCGUCCuCCg -3' miRNA: 3'- agaGCUUUCG---------------AGUGAAgCGGCGGG-GG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 37356 | 0.68 | 0.550893 |
Target: 5'- cCUCGggGGCgUCcgACUUgCGCgCGUCaCCCg -3' miRNA: 3'- aGAGCuuUCG-AG--UGAA-GCG-GCGG-GGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 5919 | 0.7 | 0.457351 |
Target: 5'- aUCUCGcgcAAGCUgGacgCGCCGCCUUCg -3' miRNA: 3'- -AGAGCu--UUCGAgUgaaGCGGCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 12260 | 0.7 | 0.436741 |
Target: 5'- -aUUGAAGGC-CGCUggcgccgugaaacUgGCCGUCCCCg -3' miRNA: 3'- agAGCUUUCGaGUGA-------------AgCGGCGGGGG- -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 26328 | 0.66 | 0.671424 |
Target: 5'- gCUCG-AAGCUCugcgccgucuuGCggugcugCGCCGCCUCg -3' miRNA: 3'- aGAGCuUUCGAG-----------UGaa-----GCGGCGGGGg -5' |
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11447 | 5' | -55.7 | NC_003085.1 | + | 35947 | 0.67 | 0.594411 |
Target: 5'- gCUUGcGGAGCUUcucgACgUUCGCCGCUgCCa -3' miRNA: 3'- aGAGC-UUUCGAG----UG-AAGCGGCGGgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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