miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11448 3' -53.1 NC_003085.1 + 48131 0.66 0.825063
Target:  5'- gCC-AGCAgucUGGGCUgccuccucCAGCGCGGCGUc -3'
miRNA:   3'- -GGcUUGU---GCUUGAa-------GUCGCGCCGCAu -5'
11448 3' -53.1 NC_003085.1 + 14770 0.66 0.825063
Target:  5'- cUCGcACACGAgGCcaaaCGGCGCGGgGUGc -3'
miRNA:   3'- -GGCuUGUGCU-UGaa--GUCGCGCCgCAU- -5'
11448 3' -53.1 NC_003085.1 + 40778 0.66 0.825063
Target:  5'- cCCGAaguGCGCGcACgcgUCGcGCGCGGaCGg- -3'
miRNA:   3'- -GGCU---UGUGCuUGa--AGU-CGCGCC-GCau -5'
11448 3' -53.1 NC_003085.1 + 45341 0.66 0.825063
Target:  5'- gCGGcGCugGAGuccCAGCGCGGCGc- -3'
miRNA:   3'- gGCU-UGugCUUgaaGUCGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 26453 0.66 0.815658
Target:  5'- uCUGGGCGCcaGGACUgCGGCGCGcGCa-- -3'
miRNA:   3'- -GGCUUGUG--CUUGAaGUCGCGC-CGcau -5'
11448 3' -53.1 NC_003085.1 + 47364 0.66 0.806052
Target:  5'- gCCGAugGCGccga--GGUGCGGCGg- -3'
miRNA:   3'- -GGCUugUGCuugaagUCGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 35604 0.66 0.806052
Target:  5'- gCCGGGCGCGggUUgccgcacaucCGGCacuucccuggGCGGCGUc -3'
miRNA:   3'- -GGCUUGUGCuuGAa---------GUCG----------CGCCGCAu -5'
11448 3' -53.1 NC_003085.1 + 16720 0.66 0.803133
Target:  5'- gCGAGCACucuGCUcugcgauggcauccUCGGUGUGGCGa- -3'
miRNA:   3'- gGCUUGUGcu-UGA--------------AGUCGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 17922 0.66 0.796257
Target:  5'- aCGggUGCcuGCgccCAGCGCGGCGc- -3'
miRNA:   3'- gGCuuGUGcuUGaa-GUCGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 5216 0.66 0.796257
Target:  5'- uCCGAGCGCGAcg--CGGCcCGGCa-- -3'
miRNA:   3'- -GGCUUGUGCUugaaGUCGcGCCGcau -5'
11448 3' -53.1 NC_003085.1 + 27580 0.66 0.793283
Target:  5'- -aGGGCACGGACccggccagUUCGgccaccuucggccuGCGCGGUGUGu -3'
miRNA:   3'- ggCUUGUGCUUG--------AAGU--------------CGCGCCGCAU- -5'
11448 3' -53.1 NC_003085.1 + 21590 0.66 0.786283
Target:  5'- aCGGGCAUGGccgACaUCAuGCGUGGCGc- -3'
miRNA:   3'- gGCUUGUGCU---UGaAGU-CGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 4122 0.66 0.786283
Target:  5'- gCCGcGCugGGACUcCAGCGCcGCu-- -3'
miRNA:   3'- -GGCuUGugCUUGAaGUCGCGcCGcau -5'
11448 3' -53.1 NC_003085.1 + 2010 0.67 0.776143
Target:  5'- aCCGA--GCGGAUg-CGGCGUGGCGc- -3'
miRNA:   3'- -GGCUugUGCUUGaaGUCGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 26705 0.67 0.765848
Target:  5'- aCCGcg-GCGGGCgucgUCGGCGCGG-GUGu -3'
miRNA:   3'- -GGCuugUGCUUGa---AGUCGCGCCgCAU- -5'
11448 3' -53.1 NC_003085.1 + 34173 0.67 0.765848
Target:  5'- cCCGGgccaGCAUGAcGCg--GGCGCGGCGg- -3'
miRNA:   3'- -GGCU----UGUGCU-UGaagUCGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 26219 0.67 0.765848
Target:  5'- gCGGgcgGCGCGGuGCga-AGCGCGGCGg- -3'
miRNA:   3'- gGCU---UGUGCU-UGaagUCGCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 24420 0.67 0.744842
Target:  5'- gCCGAACAcCGGGucCUUC-GCGCGG-GUGa -3'
miRNA:   3'- -GGCUUGU-GCUU--GAAGuCGCGCCgCAU- -5'
11448 3' -53.1 NC_003085.1 + 5176 0.67 0.734154
Target:  5'- uCCuGGCGCGGAaggCAGgGCGGCGc- -3'
miRNA:   3'- -GGcUUGUGCUUgaaGUCgCGCCGCau -5'
11448 3' -53.1 NC_003085.1 + 15832 0.67 0.734154
Target:  5'- gUGGAUGCGGuGCUUCGGUGCaaGGCGa- -3'
miRNA:   3'- gGCUUGUGCU-UGAAGUCGCG--CCGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.