miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11448 5' -55.4 NC_003085.1 + 30654 1.13 0.000535
Target:  5'- gGGUCCACCUUCGCCACGUCUCGUCGCu -3'
miRNA:   3'- -CCAGGUGGAAGCGGUGCAGAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 27710 0.75 0.247548
Target:  5'- cGUCCGCCcgcUGUCGCGcCUCGUUGCu -3'
miRNA:   3'- cCAGGUGGaa-GCGGUGCaGAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 20957 0.74 0.295251
Target:  5'- cGGUCCACCgccugaauggCGCgCGCGUUgcgCGUCaGCa -3'
miRNA:   3'- -CCAGGUGGaa--------GCG-GUGCAGa--GCAG-CG- -5'
11448 5' -55.4 NC_003085.1 + 16472 0.72 0.384063
Target:  5'- uGUCCgACCUgcgCGCCGCcuUCcCGUCGCu -3'
miRNA:   3'- cCAGG-UGGAa--GCGGUGc-AGaGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 46513 0.71 0.420468
Target:  5'- gGGUCCACCUcuuUgGCCuCGUgCUCGaCGUc -3'
miRNA:   3'- -CCAGGUGGA---AgCGGuGCA-GAGCaGCG- -5'
11448 5' -55.4 NC_003085.1 + 35965 0.71 0.429891
Target:  5'- cGUUCGCCgcUGCCACGUCUCcgagguccagGUCGa -3'
miRNA:   3'- cCAGGUGGaaGCGGUGCAGAG----------CAGCg -5'
11448 5' -55.4 NC_003085.1 + 32463 0.7 0.468776
Target:  5'- -aUCCGCgCUucUCGUCGcCGUCggCGUCGCg -3'
miRNA:   3'- ccAGGUG-GA--AGCGGU-GCAGa-GCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 43310 0.7 0.475766
Target:  5'- aGGUCCACCaguccCGCCAUGUCgcccuccucUCGuaccuccccgcccuUCGCg -3'
miRNA:   3'- -CCAGGUGGaa---GCGGUGCAG---------AGC--------------AGCG- -5'
11448 5' -55.4 NC_003085.1 + 29146 0.7 0.478778
Target:  5'- aGUCCGCCUacUCGCagGCGa--CGUCGCg -3'
miRNA:   3'- cCAGGUGGA--AGCGg-UGCagaGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 26517 0.7 0.488883
Target:  5'- cGUCCGgCUUCGCCGuCGcCgUCGaCGCg -3'
miRNA:   3'- cCAGGUgGAAGCGGU-GCaG-AGCaGCG- -5'
11448 5' -55.4 NC_003085.1 + 33992 0.7 0.499088
Target:  5'- --aCC-CCUgCGCCGCGUCUgGguUCGCg -3'
miRNA:   3'- ccaGGuGGAaGCGGUGCAGAgC--AGCG- -5'
11448 5' -55.4 NC_003085.1 + 2653 0.7 0.499088
Target:  5'- aGGUgaugCCGCCcaaggacgUgGCCAcCGUCaUCGUCGCg -3'
miRNA:   3'- -CCA----GGUGGa-------AgCGGU-GCAG-AGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 40942 0.7 0.499088
Target:  5'- --aCCGCCUUCGCCuGCGcccgCUgGUgCGCg -3'
miRNA:   3'- ccaGGUGGAAGCGG-UGCa---GAgCA-GCG- -5'
11448 5' -55.4 NC_003085.1 + 44123 0.7 0.509386
Target:  5'- uGGUCCuucuCCgcgGCCACGcgcuUCUCgGUCGCc -3'
miRNA:   3'- -CCAGGu---GGaagCGGUGC----AGAG-CAGCG- -5'
11448 5' -55.4 NC_003085.1 + 37967 0.7 0.509386
Target:  5'- --gCCAUCUggugCGCCAUGUCagCGUCuGCg -3'
miRNA:   3'- ccaGGUGGAa---GCGGUGCAGa-GCAG-CG- -5'
11448 5' -55.4 NC_003085.1 + 722 0.69 0.517688
Target:  5'- aGGUCCACCcgcgccucagUCGCCuccgcugguugcCGgagUUCGUCGCc -3'
miRNA:   3'- -CCAGGUGGa---------AGCGGu-----------GCa--GAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 28927 0.69 0.517688
Target:  5'- aGGuUCCACCgcgucuagCGUCAUGcgcggagucgcgCUCGUCGCg -3'
miRNA:   3'- -CC-AGGUGGaa------GCGGUGCa-----------GAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 42348 0.69 0.530241
Target:  5'- uGGaCUuCCUUCGCCGCccgCUCG-CGCa -3'
miRNA:   3'- -CCaGGuGGAAGCGGUGca-GAGCaGCG- -5'
11448 5' -55.4 NC_003085.1 + 40129 0.69 0.530241
Target:  5'- uGGUCCugGCCgcCG-CGCGUCUgaGUCGCu -3'
miRNA:   3'- -CCAGG--UGGaaGCgGUGCAGAg-CAGCG- -5'
11448 5' -55.4 NC_003085.1 + 12391 0.69 0.540785
Target:  5'- cGUCCACCUgcaucCG-CACGUCgUCGgCGCc -3'
miRNA:   3'- cCAGGUGGAa----GCgGUGCAG-AGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.