miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11448 5' -55.4 NC_003085.1 + 11116 0.67 0.681317
Target:  5'- -cUCCGCCUUCGUUgggGCG-CgCGUCGUc -3'
miRNA:   3'- ccAGGUGGAAGCGG---UGCaGaGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 24900 0.68 0.572807
Target:  5'- aGGgCCGCCUcaUCGCCgaguaacaGCG-CUCG-CGCa -3'
miRNA:   3'- -CCaGGUGGA--AGCGG--------UGCaGAGCaGCG- -5'
11448 5' -55.4 NC_003085.1 + 1511 0.68 0.604169
Target:  5'- cGGUgCGCCUcacggcCGCCaggcgugacuccaGCGUCUgcUGUCGCg -3'
miRNA:   3'- -CCAgGUGGAa-----GCGG-------------UGCAGA--GCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 29681 0.67 0.637905
Target:  5'- cGUCCACC-UCGCgACGugggaguaccUCcacgagccuggUCGUCGCu -3'
miRNA:   3'- cCAGGUGGaAGCGgUGC----------AG-----------AGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 43183 0.67 0.637905
Target:  5'- -cUCCACCgccgcgcgguacUUCGCgGCGUcCUCGUgcagCGCg -3'
miRNA:   3'- ccAGGUGG------------AAGCGgUGCA-GAGCA----GCG- -5'
11448 5' -55.4 NC_003085.1 + 41548 0.67 0.648791
Target:  5'- cGUCUGCUgcCGCCGCGgCggcaGUCGCg -3'
miRNA:   3'- cCAGGUGGaaGCGGUGCaGag--CAGCG- -5'
11448 5' -55.4 NC_003085.1 + 20233 0.67 0.659661
Target:  5'- cGGUacgucgCCACCUUCGCCcaggugGCGca--GUCGCu -3'
miRNA:   3'- -CCA------GGUGGAAGCGG------UGCagagCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 23259 0.67 0.670507
Target:  5'- --gCCGCCcgCGCacaagGCGcagCUCGUCGCg -3'
miRNA:   3'- ccaGGUGGaaGCGg----UGCa--GAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 681 0.67 0.670507
Target:  5'- cGG-CCACCUgUC-CCGCGUCcggccUCGggCGCg -3'
miRNA:   3'- -CCaGGUGGA-AGcGGUGCAG-----AGCa-GCG- -5'
11448 5' -55.4 NC_003085.1 + 18896 0.69 0.554596
Target:  5'- aGGUCCACacgcucuacggcguaCGCCugGagUUGUCGCc -3'
miRNA:   3'- -CCAGGUGgaa------------GCGGugCagAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 36164 0.69 0.551399
Target:  5'- uGGU-CGCCgaccgcUCGCCGCGaUUCGUaCGCa -3'
miRNA:   3'- -CCAgGUGGa-----AGCGGUGCaGAGCA-GCG- -5'
11448 5' -55.4 NC_003085.1 + 822 0.69 0.551399
Target:  5'- cGUgCCGCCgcaggUCGUCgagcGCGUCUcucaCGUCGCg -3'
miRNA:   3'- cCA-GGUGGa----AGCGG----UGCAGA----GCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 16472 0.72 0.384063
Target:  5'- uGUCCgACCUgcgCGCCGCcuUCcCGUCGCu -3'
miRNA:   3'- cCAGG-UGGAa--GCGGUGc-AGaGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 46513 0.71 0.420468
Target:  5'- gGGUCCACCUcuuUgGCCuCGUgCUCGaCGUc -3'
miRNA:   3'- -CCAGGUGGA---AgCGGuGCA-GAGCaGCG- -5'
11448 5' -55.4 NC_003085.1 + 43310 0.7 0.475766
Target:  5'- aGGUCCACCaguccCGCCAUGUCgcccuccucUCGuaccuccccgcccuUCGCg -3'
miRNA:   3'- -CCAGGUGGaa---GCGGUGCAG---------AGC--------------AGCG- -5'
11448 5' -55.4 NC_003085.1 + 29146 0.7 0.478778
Target:  5'- aGUCCGCCUacUCGCagGCGa--CGUCGCg -3'
miRNA:   3'- cCAGGUGGA--AGCGg-UGCagaGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 37967 0.7 0.509386
Target:  5'- --gCCAUCUggugCGCCAUGUCagCGUCuGCg -3'
miRNA:   3'- ccaGGUGGAa---GCGGUGCAGa-GCAG-CG- -5'
11448 5' -55.4 NC_003085.1 + 722 0.69 0.517688
Target:  5'- aGGUCCACCcgcgccucagUCGCCuccgcugguugcCGgagUUCGUCGCc -3'
miRNA:   3'- -CCAGGUGGa---------AGCGGu-----------GCa--GAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 40129 0.69 0.530241
Target:  5'- uGGUCCugGCCgcCG-CGCGUCUgaGUCGCu -3'
miRNA:   3'- -CCAGG--UGGaaGCgGUGCAGAg-CAGCG- -5'
11448 5' -55.4 NC_003085.1 + 42348 0.69 0.530241
Target:  5'- uGGaCUuCCUUCGCCGCccgCUCG-CGCa -3'
miRNA:   3'- -CCaGGuGGAAGCGGUGca-GAGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.