miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11448 5' -55.4 NC_003085.1 + 681 0.67 0.670507
Target:  5'- cGG-CCACCUgUC-CCGCGUCcggccUCGggCGCg -3'
miRNA:   3'- -CCaGGUGGA-AGcGGUGCAG-----AGCa-GCG- -5'
11448 5' -55.4 NC_003085.1 + 722 0.69 0.517688
Target:  5'- aGGUCCACCcgcgccucagUCGCCuccgcugguugcCGgagUUCGUCGCc -3'
miRNA:   3'- -CCAGGUGGa---------AGCGGu-----------GCa--GAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 822 0.69 0.551399
Target:  5'- cGUgCCGCCgcaggUCGUCgagcGCGUCUcucaCGUCGCg -3'
miRNA:   3'- cCA-GGUGGa----AGCGG----UGCAGA----GCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 1511 0.68 0.604169
Target:  5'- cGGUgCGCCUcacggcCGCCaggcgugacuccaGCGUCUgcUGUCGCg -3'
miRNA:   3'- -CCAgGUGGAa-----GCGG-------------UGCAGA--GCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 2653 0.7 0.499088
Target:  5'- aGGUgaugCCGCCcaaggacgUgGCCAcCGUCaUCGUCGCg -3'
miRNA:   3'- -CCA----GGUGGa-------AgCGGU-GCAG-AGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 8901 0.69 0.551399
Target:  5'- gGGUCCACCgcggcCGUCAcCGUgC-CGUCGUu -3'
miRNA:   3'- -CCAGGUGGaa---GCGGU-GCA-GaGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 11116 0.67 0.681317
Target:  5'- -cUCCGCCUUCGUUgggGCG-CgCGUCGUc -3'
miRNA:   3'- ccAGGUGGAAGCGG---UGCaGaGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 12391 0.69 0.540785
Target:  5'- cGUCCACCUgcaucCG-CACGUCgUCGgCGCc -3'
miRNA:   3'- cCAGGUGGAa----GCgGUGCAG-AGCaGCG- -5'
11448 5' -55.4 NC_003085.1 + 14108 0.69 0.563146
Target:  5'- aGGUCCACgagagugcucuuggUCGCUuuCGcCUCGUCGUa -3'
miRNA:   3'- -CCAGGUGga------------AGCGGu-GCaGAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 16472 0.72 0.384063
Target:  5'- uGUCCgACCUgcgCGCCGCcuUCcCGUCGCu -3'
miRNA:   3'- cCAGG-UGGAa--GCGGUGc-AGaGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 18896 0.69 0.554596
Target:  5'- aGGUCCACacgcucuacggcguaCGCCugGagUUGUCGCc -3'
miRNA:   3'- -CCAGGUGgaa------------GCGGugCagAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 20233 0.67 0.659661
Target:  5'- cGGUacgucgCCACCUUCGCCcaggugGCGca--GUCGCu -3'
miRNA:   3'- -CCA------GGUGGAAGCGG------UGCagagCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 20957 0.74 0.295251
Target:  5'- cGGUCCACCgccugaauggCGCgCGCGUUgcgCGUCaGCa -3'
miRNA:   3'- -CCAGGUGGaa--------GCG-GUGCAGa--GCAG-CG- -5'
11448 5' -55.4 NC_003085.1 + 23259 0.67 0.670507
Target:  5'- --gCCGCCcgCGCacaagGCGcagCUCGUCGCg -3'
miRNA:   3'- ccaGGUGGaaGCGg----UGCa--GAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 23835 0.67 0.670507
Target:  5'- gGGgcgCCcgGCCUUCGUCGucuccucCUCGUCGCg -3'
miRNA:   3'- -CCa--GG--UGGAAGCGGUgca----GAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 24167 0.67 0.670507
Target:  5'- cGUCCACCUg-GCCGg--C-CGUCGCg -3'
miRNA:   3'- cCAGGUGGAagCGGUgcaGaGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 24900 0.68 0.572807
Target:  5'- aGGgCCGCCUcaUCGCCgaguaacaGCG-CUCG-CGCa -3'
miRNA:   3'- -CCaGGUGGA--AGCGG--------UGCaGAGCaGCG- -5'
11448 5' -55.4 NC_003085.1 + 26517 0.7 0.488883
Target:  5'- cGUCCGgCUUCGCCGuCGcCgUCGaCGCg -3'
miRNA:   3'- cCAGGUgGAAGCGGU-GCaG-AGCaGCG- -5'
11448 5' -55.4 NC_003085.1 + 27328 0.66 0.734465
Target:  5'- gGGUCaACCcg-GCCAacauCGUCuUCGUCGCc -3'
miRNA:   3'- -CCAGgUGGaagCGGU----GCAG-AGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 27696 0.69 0.562076
Target:  5'- cGUUCGCCUgggccagaaugcUCGCCACGUCguagUGCu -3'
miRNA:   3'- cCAGGUGGA------------AGCGGUGCAGagcaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.