Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11449 | 5' | -55.7 | NC_003085.1 | + | 30306 | 0.66 | 0.665427 |
Target: 5'- -uGAGGACgaccccaugGCCac--CCAGCGGGCc -3' miRNA: 3'- guCUCCUGaa-------CGGcgauGGUUGCCCG- -5' |
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11449 | 5' | -55.7 | NC_003085.1 | + | 4835 | 0.66 | 0.643287 |
Target: 5'- -uGGGGugUcagucUGCCGUguUACCuGACaGGGCg -3' miRNA: 3'- guCUCCugA-----ACGGCG--AUGG-UUG-CCCG- -5' |
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11449 | 5' | -55.7 | NC_003085.1 | + | 27935 | 0.66 | 0.632195 |
Target: 5'- cCGGuaccGGACUUGCCcauCUACUcguccgcgguGugGGGCg -3' miRNA: 3'- -GUCu---CCUGAACGGc--GAUGG----------UugCCCG- -5' |
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11449 | 5' | -55.7 | NC_003085.1 | + | 26371 | 0.66 | 0.632195 |
Target: 5'- gCAGcGGA--UGCCGUUGCU--CGGGCc -3' miRNA: 3'- -GUCuCCUgaACGGCGAUGGuuGCCCG- -5' |
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11449 | 5' | -55.7 | NC_003085.1 | + | 45704 | 0.66 | 0.621104 |
Target: 5'- aCGGAGcACUgcguagacGCCGCUcACCAaguccugcGCGGGUg -3' miRNA: 3'- -GUCUCcUGAa-------CGGCGA-UGGU--------UGCCCG- -5' |
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11449 | 5' | -55.7 | NC_003085.1 | + | 951 | 0.66 | 0.621104 |
Target: 5'- cCGGGugccaGACagGCCGCUGCCG--GGGCa -3' miRNA: 3'- -GUCUc----CUGaaCGGCGAUGGUugCCCG- -5' |
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11449 | 5' | -55.7 | NC_003085.1 | + | 41540 | 0.66 | 0.654367 |
Target: 5'- uGGAGuGACgu-CUGCUGCCGcCGcGGCg -3' miRNA: 3'- gUCUC-CUGaacGGCGAUGGUuGC-CCG- -5' |
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11449 | 5' | -55.7 | NC_003085.1 | + | 41402 | 0.66 | 0.643287 |
Target: 5'- aCGGccGugUUGUCGgaGCCu-CGGGCg -3' miRNA: 3'- -GUCucCugAACGGCgaUGGuuGCCCG- -5' |
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11449 | 5' | -55.7 | NC_003085.1 | + | 26870 | 0.66 | 0.654367 |
Target: 5'- aGGAGGcgcACcUGCCGgcGCCggUGGGUg -3' miRNA: 3'- gUCUCC---UGaACGGCgaUGGuuGCCCG- -5' |
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11449 | 5' | -55.7 | NC_003085.1 | + | 41488 | 0.66 | 0.621104 |
Target: 5'- cCAGAuggcGGACcUGCUGCc-CUGugGGGCa -3' miRNA: 3'- -GUCU----CCUGaACGGCGauGGUugCCCG- -5' |
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11449 | 5' | -55.7 | NC_003085.1 | + | 11437 | 0.66 | 0.632195 |
Target: 5'- aAGGGGAagcggucGCCGUUgggGCCGACGcGGUg -3' miRNA: 3'- gUCUCCUgaa----CGGCGA---UGGUUGC-CCG- -5' |
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11449 | 5' | -55.7 | NC_003085.1 | + | 6270 | 0.66 | 0.632195 |
Target: 5'- -cGAGGAC--GCCGCgaagUACCG-CGcGGCg -3' miRNA: 3'- guCUCCUGaaCGGCG----AUGGUuGC-CCG- -5' |
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11449 | 5' | -55.7 | NC_003085.1 | + | 42691 | 0.66 | 0.643287 |
Target: 5'- gCGGaAGGGCUcucGCCGUccGCCAcgGCGcGGCa -3' miRNA: 3'- -GUC-UCCUGAa--CGGCGa-UGGU--UGC-CCG- -5' |
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11449 | 5' | -55.7 | NC_003085.1 | + | 35264 | 0.66 | 0.643287 |
Target: 5'- ---cGGGCUUGUCGCaGCCcgGACGcuGGCa -3' miRNA: 3'- gucuCCUGAACGGCGaUGG--UUGC--CCG- -5' |
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11449 | 5' | -55.7 | NC_003085.1 | + | 3084 | 0.66 | 0.654367 |
Target: 5'- aCAGcGuGACgaGCCGCagGCCGACGG-Cg -3' miRNA: 3'- -GUCuC-CUGaaCGGCGa-UGGUUGCCcG- -5' |
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11449 | 5' | -55.7 | NC_003085.1 | + | 38816 | 0.66 | 0.62554 |
Target: 5'- -cGAGGACUuuggcUGCCuCUGCCGGCGccccacacagccggaGGUg -3' miRNA: 3'- guCUCCUGA-----ACGGcGAUGGUUGC---------------CCG- -5' |
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11449 | 5' | -55.7 | NC_003085.1 | + | 32230 | 0.67 | 0.565983 |
Target: 5'- cCAGAGcACggggcGCCGCgugcucACCAGCGGcGCu -3' miRNA: 3'- -GUCUCcUGaa---CGGCGa-----UGGUUGCC-CG- -5' |
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11449 | 5' | -55.7 | NC_003085.1 | + | 17290 | 0.67 | 0.565983 |
Target: 5'- -uGAGGAUgcGCCGCUGCUGGauGuGCg -3' miRNA: 3'- guCUCCUGaaCGGCGAUGGUUgcC-CG- -5' |
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11449 | 5' | -55.7 | NC_003085.1 | + | 4196 | 0.67 | 0.576933 |
Target: 5'- gCAGAcgcaGGAC--GCCGCUgacGCgCGGCGGGUu -3' miRNA: 3'- -GUCU----CCUGaaCGGCGA---UG-GUUGCCCG- -5' |
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11449 | 5' | -55.7 | NC_003085.1 | + | 2264 | 0.67 | 0.576933 |
Target: 5'- cCGGGGGGCcucGUCGCggACUucuucGCGGGCu -3' miRNA: 3'- -GUCUCCUGaa-CGGCGa-UGGu----UGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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