miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11449 5' -55.7 NC_003085.1 + 457 0.71 0.357964
Target:  5'- gCGGAGGGCcaGCCgGCgcuguugcaggUGCCcACGGGCg -3'
miRNA:   3'- -GUCUCCUGaaCGG-CG-----------AUGGuUGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 951 0.66 0.621104
Target:  5'- cCGGGugccaGACagGCCGCUGCCG--GGGCa -3'
miRNA:   3'- -GUCUc----CUGaaCGGCGAUGGUugCCCG- -5'
11449 5' -55.7 NC_003085.1 + 1633 0.72 0.324013
Target:  5'- aCAGAGGaggcguagucaugGCcUGCCGUcccuacUACCAACGcGGCg -3'
miRNA:   3'- -GUCUCC-------------UGaACGGCG------AUGGUUGC-CCG- -5'
11449 5' -55.7 NC_003085.1 + 2264 0.67 0.576933
Target:  5'- cCGGGGGGCcucGUCGCggACUucuucGCGGGCu -3'
miRNA:   3'- -GUCUCCUGaa-CGGCGa-UGGu----UGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 2717 0.69 0.480959
Target:  5'- -cGAGGACUucggGCgGCUGgCAGCGcGCg -3'
miRNA:   3'- guCUCCUGAa---CGgCGAUgGUUGCcCG- -5'
11449 5' -55.7 NC_003085.1 + 3084 0.66 0.654367
Target:  5'- aCAGcGuGACgaGCCGCagGCCGACGG-Cg -3'
miRNA:   3'- -GUCuC-CUGaaCGGCGa-UGGUUGCCcG- -5'
11449 5' -55.7 NC_003085.1 + 4196 0.67 0.576933
Target:  5'- gCAGAcgcaGGAC--GCCGCUgacGCgCGGCGGGUu -3'
miRNA:   3'- -GUCU----CCUGaaCGGCGA---UG-GUUGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 4606 0.68 0.533493
Target:  5'- -cGAGGGCccUGCCGUUuUCGucgugACGGGCu -3'
miRNA:   3'- guCUCCUGa-ACGGCGAuGGU-----UGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 4835 0.66 0.643287
Target:  5'- -uGGGGugUcagucUGCCGUguUACCuGACaGGGCg -3'
miRNA:   3'- guCUCCugA-----ACGGCG--AUGG-UUG-CCCG- -5'
11449 5' -55.7 NC_003085.1 + 5710 0.75 0.221092
Target:  5'- uGGcGGGACUcgGCCGuCUACUcGCGGGCc -3'
miRNA:   3'- gUC-UCCUGAa-CGGC-GAUGGuUGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 6270 0.66 0.632195
Target:  5'- -cGAGGAC--GCCGCgaagUACCG-CGcGGCg -3'
miRNA:   3'- guCUCCUGaaCGGCG----AUGGUuGC-CCG- -5'
11449 5' -55.7 NC_003085.1 + 7075 0.67 0.570357
Target:  5'- aGGAGGACaaggcccgcgcucaUGCCGCcgagggcaugcGCgAGCGGGCg -3'
miRNA:   3'- gUCUCCUGa-------------ACGGCGa----------UGgUUGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 7548 0.73 0.258748
Target:  5'- gAGGGGugUgacgucgaccuUGCCGCgGCCGAgGGGUu -3'
miRNA:   3'- gUCUCCugA-----------ACGGCGaUGGUUgCCCG- -5'
11449 5' -55.7 NC_003085.1 + 8491 0.68 0.498556
Target:  5'- -cGAGGcGCUgGCCcgccaguacgacgcGC-ACCAGCGGGCg -3'
miRNA:   3'- guCUCC-UGAaCGG--------------CGaUGGUUGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 9166 0.67 0.598961
Target:  5'- gUAGAGGGCga--CGCUGCCcaGGCcGGCg -3'
miRNA:   3'- -GUCUCCUGaacgGCGAUGG--UUGcCCG- -5'
11449 5' -55.7 NC_003085.1 + 10517 0.69 0.491275
Target:  5'- -uGAGGACgacccaGCCGCcagugaguCCAcCGGGCa -3'
miRNA:   3'- guCUCCUGaa----CGGCGau------GGUuGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 10734 0.68 0.533493
Target:  5'- aAGcGGACgcugUUGCUGUccgGCCAcACGGGCg -3'
miRNA:   3'- gUCuCCUG----AACGGCGa--UGGU-UGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 10912 0.76 0.183164
Target:  5'- aGGAGGACagGCUGCUguACCAGCGcGCa -3'
miRNA:   3'- gUCUCCUGaaCGGCGA--UGGUUGCcCG- -5'
11449 5' -55.7 NC_003085.1 + 11437 0.66 0.632195
Target:  5'- aAGGGGAagcggucGCCGUUgggGCCGACGcGGUg -3'
miRNA:   3'- gUCUCCUgaa----CGGCGA---UGGUUGC-CCG- -5'
11449 5' -55.7 NC_003085.1 + 11617 0.72 0.309112
Target:  5'- aAG-GGGCUgugcagggGCUGCUACCAGCGcGCg -3'
miRNA:   3'- gUCuCCUGAa-------CGGCGAUGGUUGCcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.