miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11449 5' -55.7 NC_003085.1 + 30445 1.1 0.0006
Target:  5'- cCAGAGGACUUGCCGCUACCAACGGGCc -3'
miRNA:   3'- -GUCUCCUGAACGGCGAUGGUUGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 40472 0.83 0.06051
Target:  5'- uGGuGGGACUccUGUCGCUGCUGGCGGGCg -3'
miRNA:   3'- gUC-UCCUGA--ACGGCGAUGGUUGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 26677 0.82 0.072068
Target:  5'- gGGAGcGGCcgUUGCCGCUGCCGucgccaccgcgGCGGGCg -3'
miRNA:   3'- gUCUC-CUG--AACGGCGAUGGU-----------UGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 11678 0.79 0.107816
Target:  5'- aGGuGGGGCUgugaguUGCCGCUACCAguucAUGGGCg -3'
miRNA:   3'- gUC-UCCUGA------ACGGCGAUGGU----UGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 15013 0.77 0.161477
Target:  5'- cCAGAgcaacuGGACUUGCCGCUggGCCGGCccaagccgcagcccaGGGCc -3'
miRNA:   3'- -GUCU------CCUGAACGGCGA--UGGUUG---------------CCCG- -5'
11449 5' -55.7 NC_003085.1 + 10912 0.76 0.183164
Target:  5'- aGGAGGACagGCUGCUguACCAGCGcGCa -3'
miRNA:   3'- gUCUCCUGaaCGGCGA--UGGUUGCcCG- -5'
11449 5' -55.7 NC_003085.1 + 16703 0.75 0.198661
Target:  5'- -cGGGGGCUUGggGCUugCGACGGGUu -3'
miRNA:   3'- guCUCCUGAACggCGAugGUUGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 5710 0.75 0.221092
Target:  5'- uGGcGGGACUcgGCCGuCUACUcGCGGGCc -3'
miRNA:   3'- gUC-UCCUGAa-CGGC-GAUGGuUGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 43597 0.74 0.245004
Target:  5'- gCAGAGGuCgcaGgCGCUGCCAucccgagugcagaGCGGGCa -3'
miRNA:   3'- -GUCUCCuGaa-CgGCGAUGGU-------------UGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 43379 0.74 0.245004
Target:  5'- aCGGAGGACUcccugggGCCGCUGgugcaucCCgGugGGGCu -3'
miRNA:   3'- -GUCUCCUGAa------CGGCGAU-------GG-UugCCCG- -5'
11449 5' -55.7 NC_003085.1 + 48359 0.73 0.258748
Target:  5'- --cGGGACggGCuCGCUGCCGcggAUGGGCa -3'
miRNA:   3'- gucUCCUGaaCG-GCGAUGGU---UGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 7548 0.73 0.258748
Target:  5'- gAGGGGugUgacgucgaccuUGCCGCgGCCGAgGGGUu -3'
miRNA:   3'- gUCUCCugA-----------ACGGCGaUGGUUgCCCG- -5'
11449 5' -55.7 NC_003085.1 + 25767 0.73 0.265511
Target:  5'- aCGGAGGAg--GCUGCUGC--GCGGGCc -3'
miRNA:   3'- -GUCUCCUgaaCGGCGAUGguUGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 18525 0.72 0.299221
Target:  5'- aAGAGGugUgcggGCCGaUUGCCcagaagcacgagguGGCGGGCa -3'
miRNA:   3'- gUCUCCugAa---CGGC-GAUGG--------------UUGCCCG- -5'
11449 5' -55.7 NC_003085.1 + 11617 0.72 0.309112
Target:  5'- aAG-GGGCUgugcagggGCUGCUACCAGCGcGCg -3'
miRNA:   3'- gUCuCCUGAa-------CGGCGAUGGUUGCcCG- -5'
11449 5' -55.7 NC_003085.1 + 1633 0.72 0.324013
Target:  5'- aCAGAGGaggcguagucaugGCcUGCCGUcccuacUACCAACGcGGCg -3'
miRNA:   3'- -GUCUCC-------------UGaACGGCG------AUGGUUGC-CCG- -5'
11449 5' -55.7 NC_003085.1 + 20033 0.72 0.332067
Target:  5'- uGGAGGACggcaUUGCCGCcGCCcgcgcccuccuggAGCGGGa -3'
miRNA:   3'- gUCUCCUG----AACGGCGaUGG-------------UUGCCCg -5'
11449 5' -55.7 NC_003085.1 + 40354 0.72 0.332881
Target:  5'- gCGGuGGGCaaGCCGCUGCUGcccGCGGcGCu -3'
miRNA:   3'- -GUCuCCUGaaCGGCGAUGGU---UGCC-CG- -5'
11449 5' -55.7 NC_003085.1 + 28809 0.71 0.338617
Target:  5'- -cGAGGAg-UGCCGCUggcucaaggaguagGCCAugGGGa -3'
miRNA:   3'- guCUCCUgaACGGCGA--------------UGGUugCCCg -5'
11449 5' -55.7 NC_003085.1 + 38220 0.71 0.341096
Target:  5'- ---cGGACUUGCCGCgguagugcACCAccuUGGGCu -3'
miRNA:   3'- gucuCCUGAACGGCGa-------UGGUu--GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.