Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11451 | 5' | -64 | NC_003085.1 | + | 28706 | 1.06 | 0.000188 |
Target: 5'- aCAGCCCGAAGCCGGGCAGCAGCCGGUc -3' miRNA: 3'- -GUCGGGCUUCGGCCCGUCGUCGGCCA- -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 22122 | 0.78 | 0.03217 |
Target: 5'- gAGCCCGgcGCC--GCAGCAGCCGGa -3' miRNA: 3'- gUCGGGCuuCGGccCGUCGUCGGCCa -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 32885 | 0.75 | 0.056531 |
Target: 5'- gUAGCCCGGgucgucgcaguGGCCGGGCGccacGCAGuuGGa -3' miRNA: 3'- -GUCGGGCU-----------UCGGCCCGU----CGUCggCCa -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 48776 | 0.73 | 0.072649 |
Target: 5'- -cGCCCGAGGCCGGacGCgggacaGGUGGCCGGc -3' miRNA: 3'- guCGGGCUUCGGCC--CG------UCGUCGGCCa -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 24222 | 0.72 | 0.088153 |
Target: 5'- -cGCCgCGGAGCgcaccaGGGCGGC-GCCGGUg -3' miRNA: 3'- guCGG-GCUUCGg-----CCCGUCGuCGGCCA- -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 1502 | 0.72 | 0.098377 |
Target: 5'- gCGGCCCGuccggcGCuCGGGCaagaGGCAGCCGaGUa -3' miRNA: 3'- -GUCGGGCuu----CG-GCCCG----UCGUCGGC-CA- -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 11438 | 0.72 | 0.101103 |
Target: 5'- aCGGCCCGugcaagGAGUgGGGCuGCAccGCCGGg -3' miRNA: 3'- -GUCGGGC------UUCGgCCCGuCGU--CGGCCa -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 20604 | 0.71 | 0.1039 |
Target: 5'- gCAGCgCCgcgGAAGUCGGGCGGC-GCgGGUg -3' miRNA: 3'- -GUCG-GG---CUUCGGCCCGUCGuCGgCCA- -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 31651 | 0.7 | 0.129032 |
Target: 5'- cCAGCCCGAcuGCUcGGCGGCAGaUUGGUc -3' miRNA: 3'- -GUCGGGCUu-CGGcCCGUCGUC-GGCCA- -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 43659 | 0.7 | 0.129032 |
Target: 5'- gCAGCCCGGggGGCgGGGUuGCAG-CGGa -3' miRNA: 3'- -GUCGGGCU--UCGgCCCGuCGUCgGCCa -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 5140 | 0.7 | 0.135778 |
Target: 5'- -cGCCCGAagaggaGGCCGacgcgaaGGCAGCGGCCa-- -3' miRNA: 3'- guCGGGCU------UCGGC-------CCGUCGUCGGcca -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 12011 | 0.7 | 0.13983 |
Target: 5'- gCGGCCUGAcGCUGGcGCAcCuGCCGGUg -3' miRNA: 3'- -GUCGGGCUuCGGCC-CGUcGuCGGCCA- -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 20350 | 0.7 | 0.13983 |
Target: 5'- aCGGCgCCucAGCgCGGG-AGCGGCCGGa -3' miRNA: 3'- -GUCG-GGcuUCG-GCCCgUCGUCGGCCa -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 23771 | 0.69 | 0.151452 |
Target: 5'- gCAGCCuCGAAGCggcaUGGGCGaauucgucCGGCCGGUa -3' miRNA: 3'- -GUCGG-GCUUCG----GCCCGUc-------GUCGGCCA- -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 42715 | 0.69 | 0.163944 |
Target: 5'- aCGGCgCGGcaGGCCGGGCAGuCGGaccauCGGUc -3' miRNA: 3'- -GUCGgGCU--UCGGCCCGUC-GUCg----GCCA- -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 46631 | 0.68 | 0.172779 |
Target: 5'- -cGCCCGGcuGCCGGGCAGacguguuGCCaGUg -3' miRNA: 3'- guCGGGCUu-CGGCCCGUCgu-----CGGcCA- -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 48253 | 0.68 | 0.177354 |
Target: 5'- gCAGCgCGgcGCCGGGguGaGGuuGGUc -3' miRNA: 3'- -GUCGgGCuuCGGCCCguCgUCggCCA- -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 7961 | 0.68 | 0.181564 |
Target: 5'- gUAGCCgaUGAAGUCGGGCcgguAGCAGCgcuggcgCGGUa -3' miRNA: 3'- -GUCGG--GCUUCGGCCCG----UCGUCG-------GCCA- -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 36909 | 0.68 | 0.186345 |
Target: 5'- cCAGCCCGGccagcGGCgCGGGUGGCAucccucuGCCGcGa -3' miRNA: 3'- -GUCGGGCU-----UCG-GCCCGUCGU-------CGGC-Ca -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 41762 | 0.68 | 0.191731 |
Target: 5'- -cGCCCGGccAGCCuGGaAGCccAGCCGGUa -3' miRNA: 3'- guCGGGCU--UCGGcCCgUCG--UCGGCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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