miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11451 5' -64 NC_003085.1 + 42021 0.66 0.262358
Target:  5'- uCGGCacggaCGAgggcgccuucucuccAGCCGGGUAGCAGuCCGc- -3'
miRNA:   3'- -GUCGg----GCU---------------UCGGCCCGUCGUC-GGCca -5'
11451 5' -64 NC_003085.1 + 9464 0.67 0.20712
Target:  5'- gAGCUCGAGGCCGGGCAauucgucCAGCg--- -3'
miRNA:   3'- gUCGGGCUUCGGCCCGUc------GUCGgcca -5'
11451 5' -64 NC_003085.1 + 22928 0.67 0.20712
Target:  5'- aAGCCCuccGAGGCCgcgucgacGGcGCGGCgaAGCCGGa -3'
miRNA:   3'- gUCGGG---CUUCGG--------CC-CGUCG--UCGGCCa -5'
11451 5' -64 NC_003085.1 + 23187 0.67 0.215756
Target:  5'- uCAGgCCGAgGGCCaggacccugugaaGGCAGUGGCCGGg -3'
miRNA:   3'- -GUCgGGCU-UCGGc------------CCGUCGUCGGCCa -5'
11451 5' -64 NC_003085.1 + 41335 0.66 0.240504
Target:  5'- aAGCCCGggGaCUuGGCcuucuacGGCAGgCCGGg -3'
miRNA:   3'- gUCGGGCuuC-GGcCCG-------UCGUC-GGCCa -5'
11451 5' -64 NC_003085.1 + 335 0.66 0.241106
Target:  5'- aAGCCCGccGCCaagaaGGGCGGCAagggaugagcGCCGa- -3'
miRNA:   3'- gUCGGGCuuCGG-----CCCGUCGU----------CGGCca -5'
11451 5' -64 NC_003085.1 + 15182 0.66 0.241106
Target:  5'- aCGGCCCGGcugAGCCGGuGCgccAGC-GCCGc- -3'
miRNA:   3'- -GUCGGGCU---UCGGCC-CG---UCGuCGGCca -5'
11451 5' -64 NC_003085.1 + 35301 0.66 0.253428
Target:  5'- -uGCUCGGcagcaGGUCGcGGCGGCuGUCGGUg -3'
miRNA:   3'- guCGGGCU-----UCGGC-CCGUCGuCGGCCA- -5'
11451 5' -64 NC_003085.1 + 31912 0.66 0.259781
Target:  5'- aGGCggaCGAGGCaCGGgaGCAGCAcCCGGUg -3'
miRNA:   3'- gUCGg--GCUUCG-GCC--CGUCGUcGGCCA- -5'
11451 5' -64 NC_003085.1 + 41120 0.67 0.20659
Target:  5'- aGGCCC-AGGCCGaGcGCGGCAccccguacugcugGCCGGa -3'
miRNA:   3'- gUCGGGcUUCGGC-C-CGUCGU-------------CGGCCa -5'
11451 5' -64 NC_003085.1 + 41762 0.68 0.191731
Target:  5'- -cGCCCGGccAGCCuGGaAGCccAGCCGGUa -3'
miRNA:   3'- guCGGGCU--UCGGcCCgUCG--UCGGCCA- -5'
11451 5' -64 NC_003085.1 + 48253 0.68 0.177354
Target:  5'- gCAGCgCGgcGCCGGGguGaGGuuGGUc -3'
miRNA:   3'- -GUCGgGCuuCGGCCCguCgUCggCCA- -5'
11451 5' -64 NC_003085.1 + 11438 0.72 0.101103
Target:  5'- aCGGCCCGugcaagGAGUgGGGCuGCAccGCCGGg -3'
miRNA:   3'- -GUCGGGC------UUCGgCCCGuCGU--CGGCCa -5'
11451 5' -64 NC_003085.1 + 43659 0.7 0.129032
Target:  5'- gCAGCCCGGggGGCgGGGUuGCAG-CGGa -3'
miRNA:   3'- -GUCGGGCU--UCGgCCCGuCGUCgGCCa -5'
11451 5' -64 NC_003085.1 + 31651 0.7 0.129032
Target:  5'- cCAGCCCGAcuGCUcGGCGGCAGaUUGGUc -3'
miRNA:   3'- -GUCGGGCUu-CGGcCCGUCGUC-GGCCA- -5'
11451 5' -64 NC_003085.1 + 5140 0.7 0.135778
Target:  5'- -cGCCCGAagaggaGGCCGacgcgaaGGCAGCGGCCa-- -3'
miRNA:   3'- guCGGGCU------UCGGC-------CCGUCGUCGGcca -5'
11451 5' -64 NC_003085.1 + 12011 0.7 0.13983
Target:  5'- gCGGCCUGAcGCUGGcGCAcCuGCCGGUg -3'
miRNA:   3'- -GUCGGGCUuCGGCC-CGUcGuCGGCCA- -5'
11451 5' -64 NC_003085.1 + 20350 0.7 0.13983
Target:  5'- aCGGCgCCucAGCgCGGG-AGCGGCCGGa -3'
miRNA:   3'- -GUCG-GGcuUCG-GCCCgUCGUCGGCCa -5'
11451 5' -64 NC_003085.1 + 23771 0.69 0.151452
Target:  5'- gCAGCCuCGAAGCggcaUGGGCGaauucgucCGGCCGGUa -3'
miRNA:   3'- -GUCGG-GCUUCG----GCCCGUc-------GUCGGCCA- -5'
11451 5' -64 NC_003085.1 + 46631 0.68 0.172779
Target:  5'- -cGCCCGGcuGCCGGGCAGacguguuGCCaGUg -3'
miRNA:   3'- guCGGGCUu-CGGCCCGUCgu-----CGGcCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.