miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11451 5' -64 NC_003085.1 + 46631 0.68 0.172779
Target:  5'- -cGCCCGGcuGCCGGGCAGacguguuGCCaGUg -3'
miRNA:   3'- guCGGGCUu-CGGCCCGUCgu-----CGGcCA- -5'
11451 5' -64 NC_003085.1 + 48253 0.68 0.177354
Target:  5'- gCAGCgCGgcGCCGGGguGaGGuuGGUc -3'
miRNA:   3'- -GUCGgGCuuCGGCCCguCgUCggCCA- -5'
11451 5' -64 NC_003085.1 + 36909 0.68 0.186345
Target:  5'- cCAGCCCGGccagcGGCgCGGGUGGCAucccucuGCCGcGa -3'
miRNA:   3'- -GUCGGGCU-----UCG-GCCCGUCGU-------CGGC-Ca -5'
11451 5' -64 NC_003085.1 + 7961 0.68 0.181564
Target:  5'- gUAGCCgaUGAAGUCGGGCcgguAGCAGCgcuggcgCGGUa -3'
miRNA:   3'- -GUCGG--GCUUCGGCCCG----UCGUCG-------GCCA- -5'
11451 5' -64 NC_003085.1 + 42715 0.69 0.163944
Target:  5'- aCGGCgCGGcaGGCCGGGCAGuCGGaccauCGGUc -3'
miRNA:   3'- -GUCGgGCU--UCGGCCCGUC-GUCg----GCCA- -5'
11451 5' -64 NC_003085.1 + 20604 0.71 0.1039
Target:  5'- gCAGCgCCgcgGAAGUCGGGCGGC-GCgGGUg -3'
miRNA:   3'- -GUCG-GG---CUUCGGCCCGUCGuCGgCCA- -5'
11451 5' -64 NC_003085.1 + 1502 0.72 0.098377
Target:  5'- gCGGCCCGuccggcGCuCGGGCaagaGGCAGCCGaGUa -3'
miRNA:   3'- -GUCGGGCuu----CG-GCCCG----UCGUCGGC-CA- -5'
11451 5' -64 NC_003085.1 + 24222 0.72 0.088153
Target:  5'- -cGCCgCGGAGCgcaccaGGGCGGC-GCCGGUg -3'
miRNA:   3'- guCGG-GCUUCGg-----CCCGUCGuCGGCCA- -5'
11451 5' -64 NC_003085.1 + 48776 0.73 0.072649
Target:  5'- -cGCCCGAGGCCGGacGCgggacaGGUGGCCGGc -3'
miRNA:   3'- guCGGGCUUCGGCC--CG------UCGUCGGCCa -5'
11451 5' -64 NC_003085.1 + 32885 0.75 0.056531
Target:  5'- gUAGCCCGGgucgucgcaguGGCCGGGCGccacGCAGuuGGa -3'
miRNA:   3'- -GUCGGGCU-----------UCGGCCCGU----CGUCggCCa -5'
11451 5' -64 NC_003085.1 + 2771 0.68 0.196746
Target:  5'- uGGCCgGAAGCa-GGCAGCGG-CGGc -3'
miRNA:   3'- gUCGGgCUUCGgcCCGUCGUCgGCCa -5'
11451 5' -64 NC_003085.1 + 48679 0.67 0.201875
Target:  5'- uGGCCUGggGCCacaGCAGCAGgCCGc- -3'
miRNA:   3'- gUCGGGCuuCGGcc-CGUCGUC-GGCca -5'
11451 5' -64 NC_003085.1 + 40430 0.66 0.263654
Target:  5'- gCAGCCgCGGugugguguggaagAGCCGGGCggacuugaggagguAGUccucuaccgGGCCGGUg -3'
miRNA:   3'- -GUCGG-GCU-------------UCGGCCCG--------------UCG---------UCGGCCA- -5'
11451 5' -64 NC_003085.1 + 38418 0.66 0.2528
Target:  5'- gUAGCCCGucacAAGuCCGGGCcugucucGGCGGUCGa- -3'
miRNA:   3'- -GUCGGGC----UUC-GGCCCG-------UCGUCGGCca -5'
11451 5' -64 NC_003085.1 + 1747 0.66 0.247204
Target:  5'- -cGCCCGucAGCaGGcGCAGCAGUCGa- -3'
miRNA:   3'- guCGGGCu-UCGgCC-CGUCGUCGGCca -5'
11451 5' -64 NC_003085.1 + 18095 0.67 0.220189
Target:  5'- gCGGCCgGGgucgagcuucuugucGGCgCGGGCGGgaCGGCCGGc -3'
miRNA:   3'- -GUCGGgCU---------------UCG-GCCCGUC--GUCGGCCa -5'
11451 5' -64 NC_003085.1 + 2840 0.67 0.217963
Target:  5'- -uGCCCGGcAGCCGGGCgaggagggcugAGCcauGCCGa- -3'
miRNA:   3'- guCGGGCU-UCGGCCCG-----------UCGu--CGGCca -5'
11451 5' -64 NC_003085.1 + 8630 0.67 0.212482
Target:  5'- cCAGCCCGGccGCCGucaGGUacaGGcCGGCCGGg -3'
miRNA:   3'- -GUCGGGCUu-CGGC---CCG---UC-GUCGGCCa -5'
11451 5' -64 NC_003085.1 + 9084 0.67 0.212482
Target:  5'- cCAGCgCCaGAGGCgucagcgccgCGGGCAGCAG-CGGc -3'
miRNA:   3'- -GUCG-GG-CUUCG----------GCCCGUCGUCgGCCa -5'
11451 5' -64 NC_003085.1 + 23330 0.67 0.206062
Target:  5'- gCAGCCCGAguuccacGGCCGcgucguugaugauGGaGGCAGCCGuGUc -3'
miRNA:   3'- -GUCGGGCU-------UCGGC-------------CCgUCGUCGGC-CA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.