Results 21 - 40 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11451 | 5' | -64 | NC_003085.1 | + | 23771 | 0.69 | 0.151452 |
Target: 5'- gCAGCCuCGAAGCggcaUGGGCGaauucgucCGGCCGGUa -3' miRNA: 3'- -GUCGG-GCUUCG----GCCCGUc-------GUCGGCCA- -5' |
|||||||
11451 | 5' | -64 | NC_003085.1 | + | 24222 | 0.72 | 0.088153 |
Target: 5'- -cGCCgCGGAGCgcaccaGGGCGGC-GCCGGUg -3' miRNA: 3'- guCGG-GCUUCGg-----CCCGUCGuCGGCCA- -5' |
|||||||
11451 | 5' | -64 | NC_003085.1 | + | 28706 | 1.06 | 0.000188 |
Target: 5'- aCAGCCCGAAGCCGGGCAGCAGCCGGUc -3' miRNA: 3'- -GUCGGGCUUCGGCCCGUCGUCGGCCA- -5' |
|||||||
11451 | 5' | -64 | NC_003085.1 | + | 31651 | 0.7 | 0.129032 |
Target: 5'- cCAGCCCGAcuGCUcGGCGGCAGaUUGGUc -3' miRNA: 3'- -GUCGGGCUu-CGGcCCGUCGUC-GGCCA- -5' |
|||||||
11451 | 5' | -64 | NC_003085.1 | + | 31912 | 0.66 | 0.259781 |
Target: 5'- aGGCggaCGAGGCaCGGgaGCAGCAcCCGGUg -3' miRNA: 3'- gUCGg--GCUUCG-GCC--CGUCGUcGGCCA- -5' |
|||||||
11451 | 5' | -64 | NC_003085.1 | + | 32885 | 0.75 | 0.056531 |
Target: 5'- gUAGCCCGGgucgucgcaguGGCCGGGCGccacGCAGuuGGa -3' miRNA: 3'- -GUCGGGCU-----------UCGGCCCGU----CGUCggCCa -5' |
|||||||
11451 | 5' | -64 | NC_003085.1 | + | 35301 | 0.66 | 0.253428 |
Target: 5'- -uGCUCGGcagcaGGUCGcGGCGGCuGUCGGUg -3' miRNA: 3'- guCGGGCU-----UCGGC-CCGUCGuCGGCCA- -5' |
|||||||
11451 | 5' | -64 | NC_003085.1 | + | 36909 | 0.68 | 0.186345 |
Target: 5'- cCAGCCCGGccagcGGCgCGGGUGGCAucccucuGCCGcGa -3' miRNA: 3'- -GUCGGGCU-----UCG-GCCCGUCGU-------CGGC-Ca -5' |
|||||||
11451 | 5' | -64 | NC_003085.1 | + | 38418 | 0.66 | 0.2528 |
Target: 5'- gUAGCCCGucacAAGuCCGGGCcugucucGGCGGUCGa- -3' miRNA: 3'- -GUCGGGC----UUC-GGCCCG-------UCGUCGGCca -5' |
|||||||
11451 | 5' | -64 | NC_003085.1 | + | 40430 | 0.66 | 0.263654 |
Target: 5'- gCAGCCgCGGugugguguggaagAGCCGGGCggacuugaggagguAGUccucuaccgGGCCGGUg -3' miRNA: 3'- -GUCGG-GCU-------------UCGGCCCG--------------UCG---------UCGGCCA- -5' |
|||||||
11451 | 5' | -64 | NC_003085.1 | + | 41120 | 0.67 | 0.20659 |
Target: 5'- aGGCCC-AGGCCGaGcGCGGCAccccguacugcugGCCGGa -3' miRNA: 3'- gUCGGGcUUCGGC-C-CGUCGU-------------CGGCCa -5' |
|||||||
11451 | 5' | -64 | NC_003085.1 | + | 41335 | 0.66 | 0.240504 |
Target: 5'- aAGCCCGggGaCUuGGCcuucuacGGCAGgCCGGg -3' miRNA: 3'- gUCGGGCuuC-GGcCCG-------UCGUC-GGCCa -5' |
|||||||
11451 | 5' | -64 | NC_003085.1 | + | 41762 | 0.68 | 0.191731 |
Target: 5'- -cGCCCGGccAGCCuGGaAGCccAGCCGGUa -3' miRNA: 3'- guCGGGCU--UCGGcCCgUCG--UCGGCCA- -5' |
|||||||
11451 | 5' | -64 | NC_003085.1 | + | 42021 | 0.66 | 0.262358 |
Target: 5'- uCGGCacggaCGAgggcgccuucucuccAGCCGGGUAGCAGuCCGc- -3' miRNA: 3'- -GUCGg----GCU---------------UCGGCCCGUCGUC-GGCca -5' |
|||||||
11451 | 5' | -64 | NC_003085.1 | + | 42715 | 0.69 | 0.163944 |
Target: 5'- aCGGCgCGGcaGGCCGGGCAGuCGGaccauCGGUc -3' miRNA: 3'- -GUCGgGCU--UCGGCCCGUC-GUCg----GCCA- -5' |
|||||||
11451 | 5' | -64 | NC_003085.1 | + | 43081 | 0.66 | 0.272875 |
Target: 5'- aCGGCCgaggaagaaaCGAccGGCCGccaGCAGCAcGCCGGg -3' miRNA: 3'- -GUCGG----------GCU--UCGGCc--CGUCGU-CGGCCa -5' |
|||||||
11451 | 5' | -64 | NC_003085.1 | + | 43659 | 0.7 | 0.129032 |
Target: 5'- gCAGCCCGGggGGCgGGGUuGCAG-CGGa -3' miRNA: 3'- -GUCGGGCU--UCGgCCCGuCGUCgGCCa -5' |
|||||||
11451 | 5' | -64 | NC_003085.1 | + | 46631 | 0.68 | 0.172779 |
Target: 5'- -cGCCCGGcuGCCGGGCAGacguguuGCCaGUg -3' miRNA: 3'- guCGGGCUu-CGGCCCGUCgu-----CGGcCA- -5' |
|||||||
11451 | 5' | -64 | NC_003085.1 | + | 48253 | 0.68 | 0.177354 |
Target: 5'- gCAGCgCGgcGCCGGGguGaGGuuGGUc -3' miRNA: 3'- -GUCGgGCuuCGGCCCguCgUCggCCA- -5' |
|||||||
11451 | 5' | -64 | NC_003085.1 | + | 48679 | 0.67 | 0.201875 |
Target: 5'- uGGCCUGggGCCacaGCAGCAGgCCGc- -3' miRNA: 3'- gUCGGGCuuCGGcc-CGUCGUC-GGCca -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home