Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11451 | 5' | -64 | NC_003085.1 | + | 335 | 0.66 | 0.241106 |
Target: 5'- aAGCCCGccGCCaagaaGGGCGGCAagggaugagcGCCGa- -3' miRNA: 3'- gUCGGGCuuCGG-----CCCGUCGU----------CGGCca -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 1502 | 0.72 | 0.098377 |
Target: 5'- gCGGCCCGuccggcGCuCGGGCaagaGGCAGCCGaGUa -3' miRNA: 3'- -GUCGGGCuu----CG-GCCCG----UCGUCGGC-CA- -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 1747 | 0.66 | 0.247204 |
Target: 5'- -cGCCCGucAGCaGGcGCAGCAGUCGa- -3' miRNA: 3'- guCGGGCu-UCGgCC-CGUCGUCGGCca -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 2771 | 0.68 | 0.196746 |
Target: 5'- uGGCCgGAAGCa-GGCAGCGG-CGGc -3' miRNA: 3'- gUCGGgCUUCGgcCCGUCGUCgGCCa -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 2840 | 0.67 | 0.217963 |
Target: 5'- -uGCCCGGcAGCCGGGCgaggagggcugAGCcauGCCGa- -3' miRNA: 3'- guCGGGCU-UCGGCCCG-----------UCGu--CGGCca -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 5140 | 0.7 | 0.135778 |
Target: 5'- -cGCCCGAagaggaGGCCGacgcgaaGGCAGCGGCCa-- -3' miRNA: 3'- guCGGGCU------UCGGC-------CCGUCGUCGGcca -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 7961 | 0.68 | 0.181564 |
Target: 5'- gUAGCCgaUGAAGUCGGGCcgguAGCAGCgcuggcgCGGUa -3' miRNA: 3'- -GUCGG--GCUUCGGCCCG----UCGUCG-------GCCA- -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 8630 | 0.67 | 0.212482 |
Target: 5'- cCAGCCCGGccGCCGucaGGUacaGGcCGGCCGGg -3' miRNA: 3'- -GUCGGGCUu-CGGC---CCG---UC-GUCGGCCa -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 9084 | 0.67 | 0.212482 |
Target: 5'- cCAGCgCCaGAGGCgucagcgccgCGGGCAGCAG-CGGc -3' miRNA: 3'- -GUCG-GG-CUUCG----------GCCCGUCGUCgGCCa -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 9464 | 0.67 | 0.20712 |
Target: 5'- gAGCUCGAGGCCGGGCAauucgucCAGCg--- -3' miRNA: 3'- gUCGGGCUUCGGCCCGUc------GUCGgcca -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 11438 | 0.72 | 0.101103 |
Target: 5'- aCGGCCCGugcaagGAGUgGGGCuGCAccGCCGGg -3' miRNA: 3'- -GUCGGGC------UUCGgCCCGuCGU--CGGCCa -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 12011 | 0.7 | 0.13983 |
Target: 5'- gCGGCCUGAcGCUGGcGCAcCuGCCGGUg -3' miRNA: 3'- -GUCGGGCUuCGGCC-CGUcGuCGGCCA- -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 15182 | 0.66 | 0.241106 |
Target: 5'- aCGGCCCGGcugAGCCGGuGCgccAGC-GCCGc- -3' miRNA: 3'- -GUCGGGCU---UCGGCC-CG---UCGuCGGCca -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 18095 | 0.67 | 0.220189 |
Target: 5'- gCGGCCgGGgucgagcuucuugucGGCgCGGGCGGgaCGGCCGGc -3' miRNA: 3'- -GUCGGgCU---------------UCG-GCCCGUC--GUCGGCCa -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 20350 | 0.7 | 0.13983 |
Target: 5'- aCGGCgCCucAGCgCGGG-AGCGGCCGGa -3' miRNA: 3'- -GUCG-GGcuUCG-GCCCgUCGUCGGCCa -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 20604 | 0.71 | 0.1039 |
Target: 5'- gCAGCgCCgcgGAAGUCGGGCGGC-GCgGGUg -3' miRNA: 3'- -GUCG-GG---CUUCGGCCCGUCGuCGgCCA- -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 22122 | 0.78 | 0.03217 |
Target: 5'- gAGCCCGgcGCC--GCAGCAGCCGGa -3' miRNA: 3'- gUCGGGCuuCGGccCGUCGUCGGCCa -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 22928 | 0.67 | 0.20712 |
Target: 5'- aAGCCCuccGAGGCCgcgucgacGGcGCGGCgaAGCCGGa -3' miRNA: 3'- gUCGGG---CUUCGG--------CC-CGUCG--UCGGCCa -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 23187 | 0.67 | 0.215756 |
Target: 5'- uCAGgCCGAgGGCCaggacccugugaaGGCAGUGGCCGGg -3' miRNA: 3'- -GUCgGGCU-UCGGc------------CCGUCGUCGGCCa -5' |
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11451 | 5' | -64 | NC_003085.1 | + | 23330 | 0.67 | 0.206062 |
Target: 5'- gCAGCCCGAguuccacGGCCGcgucguugaugauGGaGGCAGCCGuGUc -3' miRNA: 3'- -GUCGGGCU-------UCGGC-------------CCgUCGUCGGC-CA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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