miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11451 5' -64 NC_003085.1 + 48776 0.73 0.072649
Target:  5'- -cGCCCGAGGCCGGacGCgggacaGGUGGCCGGc -3'
miRNA:   3'- guCGGGCUUCGGCC--CG------UCGUCGGCCa -5'
11451 5' -64 NC_003085.1 + 48679 0.67 0.201875
Target:  5'- uGGCCUGggGCCacaGCAGCAGgCCGc- -3'
miRNA:   3'- gUCGGGCuuCGGcc-CGUCGUC-GGCca -5'
11451 5' -64 NC_003085.1 + 48253 0.68 0.177354
Target:  5'- gCAGCgCGgcGCCGGGguGaGGuuGGUc -3'
miRNA:   3'- -GUCGgGCuuCGGCCCguCgUCggCCA- -5'
11451 5' -64 NC_003085.1 + 46631 0.68 0.172779
Target:  5'- -cGCCCGGcuGCCGGGCAGacguguuGCCaGUg -3'
miRNA:   3'- guCGGGCUu-CGGCCCGUCgu-----CGGcCA- -5'
11451 5' -64 NC_003085.1 + 43659 0.7 0.129032
Target:  5'- gCAGCCCGGggGGCgGGGUuGCAG-CGGa -3'
miRNA:   3'- -GUCGGGCU--UCGgCCCGuCGUCgGCCa -5'
11451 5' -64 NC_003085.1 + 43081 0.66 0.272875
Target:  5'- aCGGCCgaggaagaaaCGAccGGCCGccaGCAGCAcGCCGGg -3'
miRNA:   3'- -GUCGG----------GCU--UCGGCc--CGUCGU-CGGCCa -5'
11451 5' -64 NC_003085.1 + 42715 0.69 0.163944
Target:  5'- aCGGCgCGGcaGGCCGGGCAGuCGGaccauCGGUc -3'
miRNA:   3'- -GUCGgGCU--UCGGCCCGUC-GUCg----GCCA- -5'
11451 5' -64 NC_003085.1 + 42021 0.66 0.262358
Target:  5'- uCGGCacggaCGAgggcgccuucucuccAGCCGGGUAGCAGuCCGc- -3'
miRNA:   3'- -GUCGg----GCU---------------UCGGCCCGUCGUC-GGCca -5'
11451 5' -64 NC_003085.1 + 41762 0.68 0.191731
Target:  5'- -cGCCCGGccAGCCuGGaAGCccAGCCGGUa -3'
miRNA:   3'- guCGGGCU--UCGGcCCgUCG--UCGGCCA- -5'
11451 5' -64 NC_003085.1 + 41335 0.66 0.240504
Target:  5'- aAGCCCGggGaCUuGGCcuucuacGGCAGgCCGGg -3'
miRNA:   3'- gUCGGGCuuC-GGcCCG-------UCGUC-GGCCa -5'
11451 5' -64 NC_003085.1 + 41120 0.67 0.20659
Target:  5'- aGGCCC-AGGCCGaGcGCGGCAccccguacugcugGCCGGa -3'
miRNA:   3'- gUCGGGcUUCGGC-C-CGUCGU-------------CGGCCa -5'
11451 5' -64 NC_003085.1 + 40430 0.66 0.263654
Target:  5'- gCAGCCgCGGugugguguggaagAGCCGGGCggacuugaggagguAGUccucuaccgGGCCGGUg -3'
miRNA:   3'- -GUCGG-GCU-------------UCGGCCCG--------------UCG---------UCGGCCA- -5'
11451 5' -64 NC_003085.1 + 38418 0.66 0.2528
Target:  5'- gUAGCCCGucacAAGuCCGGGCcugucucGGCGGUCGa- -3'
miRNA:   3'- -GUCGGGC----UUC-GGCCCG-------UCGUCGGCca -5'
11451 5' -64 NC_003085.1 + 36909 0.68 0.186345
Target:  5'- cCAGCCCGGccagcGGCgCGGGUGGCAucccucuGCCGcGa -3'
miRNA:   3'- -GUCGGGCU-----UCG-GCCCGUCGU-------CGGC-Ca -5'
11451 5' -64 NC_003085.1 + 35301 0.66 0.253428
Target:  5'- -uGCUCGGcagcaGGUCGcGGCGGCuGUCGGUg -3'
miRNA:   3'- guCGGGCU-----UCGGC-CCGUCGuCGGCCA- -5'
11451 5' -64 NC_003085.1 + 32885 0.75 0.056531
Target:  5'- gUAGCCCGGgucgucgcaguGGCCGGGCGccacGCAGuuGGa -3'
miRNA:   3'- -GUCGGGCU-----------UCGGCCCGU----CGUCggCCa -5'
11451 5' -64 NC_003085.1 + 31912 0.66 0.259781
Target:  5'- aGGCggaCGAGGCaCGGgaGCAGCAcCCGGUg -3'
miRNA:   3'- gUCGg--GCUUCG-GCC--CGUCGUcGGCCA- -5'
11451 5' -64 NC_003085.1 + 31651 0.7 0.129032
Target:  5'- cCAGCCCGAcuGCUcGGCGGCAGaUUGGUc -3'
miRNA:   3'- -GUCGGGCUu-CGGcCCGUCGUC-GGCCA- -5'
11451 5' -64 NC_003085.1 + 28706 1.06 0.000188
Target:  5'- aCAGCCCGAAGCCGGGCAGCAGCCGGUc -3'
miRNA:   3'- -GUCGGGCUUCGGCCCGUCGUCGGCCA- -5'
11451 5' -64 NC_003085.1 + 24222 0.72 0.088153
Target:  5'- -cGCCgCGGAGCgcaccaGGGCGGC-GCCGGUg -3'
miRNA:   3'- guCGG-GCUUCGg-----CCCGUCGuCGGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.