miRNA display CGI


Results 21 - 40 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11451 5' -64 NC_003085.1 + 2771 0.68 0.196746
Target:  5'- uGGCCgGAAGCa-GGCAGCGG-CGGc -3'
miRNA:   3'- gUCGGgCUUCGgcCCGUCGUCgGCCa -5'
11451 5' -64 NC_003085.1 + 41762 0.68 0.191731
Target:  5'- -cGCCCGGccAGCCuGGaAGCccAGCCGGUa -3'
miRNA:   3'- guCGGGCU--UCGGcCCgUCG--UCGGCCA- -5'
11451 5' -64 NC_003085.1 + 36909 0.68 0.186345
Target:  5'- cCAGCCCGGccagcGGCgCGGGUGGCAucccucuGCCGcGa -3'
miRNA:   3'- -GUCGGGCU-----UCG-GCCCGUCGU-------CGGC-Ca -5'
11451 5' -64 NC_003085.1 + 7961 0.68 0.181564
Target:  5'- gUAGCCgaUGAAGUCGGGCcgguAGCAGCgcuggcgCGGUa -3'
miRNA:   3'- -GUCGG--GCUUCGGCCCG----UCGUCG-------GCCA- -5'
11451 5' -64 NC_003085.1 + 48253 0.68 0.177354
Target:  5'- gCAGCgCGgcGCCGGGguGaGGuuGGUc -3'
miRNA:   3'- -GUCGgGCuuCGGCCCguCgUCggCCA- -5'
11451 5' -64 NC_003085.1 + 46631 0.68 0.172779
Target:  5'- -cGCCCGGcuGCCGGGCAGacguguuGCCaGUg -3'
miRNA:   3'- guCGGGCUu-CGGCCCGUCgu-----CGGcCA- -5'
11451 5' -64 NC_003085.1 + 42715 0.69 0.163944
Target:  5'- aCGGCgCGGcaGGCCGGGCAGuCGGaccauCGGUc -3'
miRNA:   3'- -GUCGgGCU--UCGGCCCGUC-GUCg----GCCA- -5'
11451 5' -64 NC_003085.1 + 23771 0.69 0.151452
Target:  5'- gCAGCCuCGAAGCggcaUGGGCGaauucgucCGGCCGGUa -3'
miRNA:   3'- -GUCGG-GCUUCG----GCCCGUc-------GUCGGCCA- -5'
11451 5' -64 NC_003085.1 + 12011 0.7 0.13983
Target:  5'- gCGGCCUGAcGCUGGcGCAcCuGCCGGUg -3'
miRNA:   3'- -GUCGGGCUuCGGCC-CGUcGuCGGCCA- -5'
11451 5' -64 NC_003085.1 + 20350 0.7 0.13983
Target:  5'- aCGGCgCCucAGCgCGGG-AGCGGCCGGa -3'
miRNA:   3'- -GUCG-GGcuUCG-GCCCgUCGUCGGCCa -5'
11451 5' -64 NC_003085.1 + 5140 0.7 0.135778
Target:  5'- -cGCCCGAagaggaGGCCGacgcgaaGGCAGCGGCCa-- -3'
miRNA:   3'- guCGGGCU------UCGGC-------CCGUCGUCGGcca -5'
11451 5' -64 NC_003085.1 + 31651 0.7 0.129032
Target:  5'- cCAGCCCGAcuGCUcGGCGGCAGaUUGGUc -3'
miRNA:   3'- -GUCGGGCUu-CGGcCCGUCGUC-GGCCA- -5'
11451 5' -64 NC_003085.1 + 43659 0.7 0.129032
Target:  5'- gCAGCCCGGggGGCgGGGUuGCAG-CGGa -3'
miRNA:   3'- -GUCGGGCU--UCGgCCCGuCGUCgGCCa -5'
11451 5' -64 NC_003085.1 + 20604 0.71 0.1039
Target:  5'- gCAGCgCCgcgGAAGUCGGGCGGC-GCgGGUg -3'
miRNA:   3'- -GUCG-GG---CUUCGGCCCGUCGuCGgCCA- -5'
11451 5' -64 NC_003085.1 + 11438 0.72 0.101103
Target:  5'- aCGGCCCGugcaagGAGUgGGGCuGCAccGCCGGg -3'
miRNA:   3'- -GUCGGGC------UUCGgCCCGuCGU--CGGCCa -5'
11451 5' -64 NC_003085.1 + 1502 0.72 0.098377
Target:  5'- gCGGCCCGuccggcGCuCGGGCaagaGGCAGCCGaGUa -3'
miRNA:   3'- -GUCGGGCuu----CG-GCCCG----UCGUCGGC-CA- -5'
11451 5' -64 NC_003085.1 + 24222 0.72 0.088153
Target:  5'- -cGCCgCGGAGCgcaccaGGGCGGC-GCCGGUg -3'
miRNA:   3'- guCGG-GCUUCGg-----CCCGUCGuCGGCCA- -5'
11451 5' -64 NC_003085.1 + 48776 0.73 0.072649
Target:  5'- -cGCCCGAGGCCGGacGCgggacaGGUGGCCGGc -3'
miRNA:   3'- guCGGGCUUCGGCC--CG------UCGUCGGCCa -5'
11451 5' -64 NC_003085.1 + 32885 0.75 0.056531
Target:  5'- gUAGCCCGGgucgucgcaguGGCCGGGCGccacGCAGuuGGa -3'
miRNA:   3'- -GUCGGGCU-----------UCGGCCCGU----CGUCggCCa -5'
11451 5' -64 NC_003085.1 + 22122 0.78 0.03217
Target:  5'- gAGCCCGgcGCC--GCAGCAGCCGGa -3'
miRNA:   3'- gUCGGGCuuCGGccCGUCGUCGGCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.