Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11452 | 5' | -59.8 | NC_003085.1 | + | 28496 | 1.06 | 0.000421 |
Target: 5'- gGUUGCGGAAGGCCAGCCACCGCACCUc -3' miRNA: 3'- -CAACGCCUUCCGGUCGGUGGCGUGGA- -5' |
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11452 | 5' | -59.8 | NC_003085.1 | + | 456 | 0.83 | 0.024224 |
Target: 5'- --cGCGGAGGGCCAGCCGgCGCugUUg -3' miRNA: 3'- caaCGCCUUCCGGUCGGUgGCGugGA- -5' |
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11452 | 5' | -59.8 | NC_003085.1 | + | 25154 | 0.72 | 0.17298 |
Target: 5'- --cGCGGuguGGCCGGCgACCGUGgCCUg -3' miRNA: 3'- caaCGCCuu-CCGGUCGgUGGCGU-GGA- -5' |
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11452 | 5' | -59.8 | NC_003085.1 | + | 31187 | 0.71 | 0.208451 |
Target: 5'- --gGCGGAAGGCCucauuggcGGUUACCGCgguaucGCCUc -3' miRNA: 3'- caaCGCCUUCCGG--------UCGGUGGCG------UGGA- -5' |
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11452 | 5' | -59.8 | NC_003085.1 | + | 48376 | 0.7 | 0.225489 |
Target: 5'- --cGCGGAuGGGCagguagCAGCCACCGUcCCa -3' miRNA: 3'- caaCGCCU-UCCG------GUCGGUGGCGuGGa -5' |
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11452 | 5' | -59.8 | NC_003085.1 | + | 47829 | 0.7 | 0.225489 |
Target: 5'- cGUUGCGGuuGuGCCAGUCGuCCGCGUCa -3' miRNA: 3'- -CAACGCCuuC-CGGUCGGU-GGCGUGGa -5' |
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11452 | 5' | -59.8 | NC_003085.1 | + | 40353 | 0.7 | 0.225489 |
Target: 5'- --gGCGGuGGGCaAGCCGCUGCugCc -3' miRNA: 3'- caaCGCCuUCCGgUCGGUGGCGugGa -5' |
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11452 | 5' | -59.8 | NC_003085.1 | + | 20966 | 0.7 | 0.225489 |
Target: 5'- -gUGCGGu-GGCUGGCCuuCCGCaACCUc -3' miRNA: 3'- caACGCCuuCCGGUCGGu-GGCG-UGGA- -5' |
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11452 | 5' | -59.8 | NC_003085.1 | + | 2085 | 0.7 | 0.231426 |
Target: 5'- --cGCGacgaGCgCAGCCGCCGCACCUc -3' miRNA: 3'- caaCGCcuucCG-GUCGGUGGCGUGGA- -5' |
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11452 | 5' | -59.8 | NC_003085.1 | + | 16933 | 0.7 | 0.243694 |
Target: 5'- --cGUGGAGGGCaaGGCC-CCGCACa- -3' miRNA: 3'- caaCGCCUUCCGg-UCGGuGGCGUGga -5' |
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11452 | 5' | -59.8 | NC_003085.1 | + | 37230 | 0.69 | 0.256498 |
Target: 5'- --gGCGGc---CCAGCCGCCGCGCUc -3' miRNA: 3'- caaCGCCuuccGGUCGGUGGCGUGGa -5' |
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11452 | 5' | -59.8 | NC_003085.1 | + | 35897 | 0.69 | 0.256498 |
Target: 5'- --cGCGGAgucccaGGGCCAuGCCACgGCcaGCCc -3' miRNA: 3'- caaCGCCU------UCCGGU-CGGUGgCG--UGGa -5' |
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11452 | 5' | -59.8 | NC_003085.1 | + | 19208 | 0.69 | 0.256498 |
Target: 5'- uGggGCGGcgGGGGCUGGgCGCCGCGCa- -3' miRNA: 3'- -CaaCGCC--UUCCGGUCgGUGGCGUGga -5' |
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11452 | 5' | -59.8 | NC_003085.1 | + | 34666 | 0.69 | 0.263104 |
Target: 5'- --cGCGGAGGauGUCGGCCuuuugcaccCCGCGCCg -3' miRNA: 3'- caaCGCCUUC--CGGUCGGu--------GGCGUGGa -5' |
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11452 | 5' | -59.8 | NC_003085.1 | + | 27472 | 0.69 | 0.276729 |
Target: 5'- -gUGCGGGAGGCCA-CC-UCGUcgGCCUg -3' miRNA: 3'- caACGCCUUCCGGUcGGuGGCG--UGGA- -5' |
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11452 | 5' | -59.8 | NC_003085.1 | + | 26674 | 0.69 | 0.28163 |
Target: 5'- --gGCGGGAgcGGCCGuugccgcugccgucGCCACCGCGgCg -3' miRNA: 3'- caaCGCCUU--CCGGU--------------CGGUGGCGUgGa -5' |
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11452 | 5' | -59.8 | NC_003085.1 | + | 25328 | 0.68 | 0.290913 |
Target: 5'- --aGcCGGAGuaCCAGCCGCCGUugCUg -3' miRNA: 3'- caaC-GCCUUccGGUCGGUGGCGugGA- -5' |
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11452 | 5' | -59.8 | NC_003085.1 | + | 31333 | 0.68 | 0.290913 |
Target: 5'- --aGCaGAcgucccAGGCCGGCCGucccgcCCGCGCCg -3' miRNA: 3'- caaCGcCU------UCCGGUCGGU------GGCGUGGa -5' |
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11452 | 5' | -59.8 | NC_003085.1 | + | 22285 | 0.68 | 0.293817 |
Target: 5'- -gUGCGGGAGGCCgcacagaagaaccucAucaGCCAggcugcCCGCGCCa -3' miRNA: 3'- caACGCCUUCCGG---------------U---CGGU------GGCGUGGa -5' |
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11452 | 5' | -59.8 | NC_003085.1 | + | 37189 | 0.68 | 0.298215 |
Target: 5'- --cGgGGAcGGCCAGUuuCACgGCGCCa -3' miRNA: 3'- caaCgCCUuCCGGUCG--GUGgCGUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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