miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11452 5' -59.8 NC_003085.1 + 456 0.83 0.024224
Target:  5'- --cGCGGAGGGCCAGCCGgCGCugUUg -3'
miRNA:   3'- caaCGCCUUCCGGUCGGUgGCGugGA- -5'
11452 5' -59.8 NC_003085.1 + 1045 0.66 0.428344
Target:  5'- -aUGCGGAGGaaGCCAgcGCCGCCgaggcagacaaugcgGCGCUg -3'
miRNA:   3'- caACGCCUUC--CGGU--CGGUGG---------------CGUGGa -5'
11452 5' -59.8 NC_003085.1 + 1251 0.67 0.379008
Target:  5'- -cUGCGGAGgcagguGGCCgaauccaaggugGGCCACCucgugcGCGCCg -3'
miRNA:   3'- caACGCCUU------CCGG------------UCGGUGG------CGUGGa -5'
11452 5' -59.8 NC_003085.1 + 2085 0.7 0.231426
Target:  5'- --cGCGacgaGCgCAGCCGCCGCACCUc -3'
miRNA:   3'- caaCGCcuucCG-GUCGGUGGCGUGGA- -5'
11452 5' -59.8 NC_003085.1 + 6697 0.66 0.434057
Target:  5'- --aGCGGcuugcGGCC-GCCcugcACCGCACCc -3'
miRNA:   3'- caaCGCCuu---CCGGuCGG----UGGCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 6708 0.66 0.424561
Target:  5'- --cGCGGcgauGGauGCCGuCCACCGCGCCc -3'
miRNA:   3'- caaCGCCu---UC--CGGUcGGUGGCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 7328 0.66 0.396833
Target:  5'- --cGCGGAGGcggcugaggacGCgGGCUACaCGCGCCc -3'
miRNA:   3'- caaCGCCUUC-----------CGgUCGGUG-GCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 8232 0.67 0.361727
Target:  5'- cGUUGUa-GAGGCCGcacGUCACCGUGCCa -3'
miRNA:   3'- -CAACGccUUCCGGU---CGGUGGCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 9154 0.67 0.379008
Target:  5'- --gGCGGA--GCUcGCCGCCGCGCa- -3'
miRNA:   3'- caaCGCCUucCGGuCGGUGGCGUGga -5'
11452 5' -59.8 NC_003085.1 + 9568 0.66 0.424561
Target:  5'- --gGCGuuuGGCCuGCCGCCGCcgagcACCg -3'
miRNA:   3'- caaCGCcuuCCGGuCGGUGGCG-----UGGa -5'
11452 5' -59.8 NC_003085.1 + 11214 0.66 0.434057
Target:  5'- --cGCGGAAGuaGgUGGCCACCGCcgacgugcuGCCg -3'
miRNA:   3'- caaCGCCUUC--CgGUCGGUGGCG---------UGGa -5'
11452 5' -59.8 NC_003085.1 + 11336 0.66 0.434057
Target:  5'- --aGCaGGgcGGCgAGCCucACgGCACCUc -3'
miRNA:   3'- caaCG-CCuuCCGgUCGG--UGgCGUGGA- -5'
11452 5' -59.8 NC_003085.1 + 12242 0.67 0.370299
Target:  5'- --gGCGGcuGGGCCgccagaauugaaGGCCGCUgGCGCCg -3'
miRNA:   3'- caaCGCCu-UCCGG------------UCGGUGG-CGUGGa -5'
11452 5' -59.8 NC_003085.1 + 12931 0.66 0.396833
Target:  5'- --gGCGGGcuGUCAGUCGCCGuCGCUa -3'
miRNA:   3'- caaCGCCUucCGGUCGGUGGC-GUGGa -5'
11452 5' -59.8 NC_003085.1 + 15027 0.66 0.387853
Target:  5'- cUUGCcgcuGGGCCGGCCcaaGCCGCAgCCc -3'
miRNA:   3'- cAACGccu-UCCGGUCGG---UGGCGU-GGa -5'
11452 5' -59.8 NC_003085.1 + 15361 0.67 0.353295
Target:  5'- -aUGCGGu-GGCCcugacGCCACCGaaccCGCCUc -3'
miRNA:   3'- caACGCCuuCCGGu----CGGUGGC----GUGGA- -5'
11452 5' -59.8 NC_003085.1 + 16933 0.7 0.243694
Target:  5'- --cGUGGAGGGCaaGGCC-CCGCACa- -3'
miRNA:   3'- caaCGCCUUCCGg-UCGGuGGCGUGga -5'
11452 5' -59.8 NC_003085.1 + 17677 0.66 0.415189
Target:  5'- --aGCGGccGGGCCGcuucGCCcaACCGCACgCUa -3'
miRNA:   3'- caaCGCCu-UCCGGU----CGG--UGGCGUG-GA- -5'
11452 5' -59.8 NC_003085.1 + 18125 0.66 0.405946
Target:  5'- --gGCGGGAcGGCCGGCCugggaCGuCugCUg -3'
miRNA:   3'- caaCGCCUU-CCGGUCGGug---GC-GugGA- -5'
11452 5' -59.8 NC_003085.1 + 19069 0.66 0.405029
Target:  5'- --gGCGGAgcaggcgccGGGCCcggacggAGUgCGCCGCACCc -3'
miRNA:   3'- caaCGCCU---------UCCGG-------UCG-GUGGCGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.