miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11452 5' -59.8 NC_003085.1 + 20280 0.66 0.387853
Target:  5'- --gGCGGAugAGGCgaAGCCcaagGCCGUGCCc -3'
miRNA:   3'- caaCGCCU--UCCGg-UCGG----UGGCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 22285 0.68 0.293817
Target:  5'- -gUGCGGGAGGCCgcacagaagaaccucAucaGCCAggcugcCCGCGCCa -3'
miRNA:   3'- caACGCCUUCCGG---------------U---CGGU------GGCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 37189 0.68 0.298215
Target:  5'- --cGgGGAcGGCCAGUuuCACgGCGCCa -3'
miRNA:   3'- caaCgCCUuCCGGUCG--GUGgCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 31389 0.68 0.313244
Target:  5'- --cGCaaaGAGGCCAGCCGCaCGUACUc -3'
miRNA:   3'- caaCGcc-UUCCGGUCGGUG-GCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 23217 0.68 0.32884
Target:  5'- --aGUGGccGGGCUgcuccagacGGCCGCCGCGCUUc -3'
miRNA:   3'- caaCGCCu-UCCGG---------UCGGUGGCGUGGA- -5'
11452 5' -59.8 NC_003085.1 + 49169 0.68 0.32884
Target:  5'- --gGUcGGAGGCCGcccgguccuGCCGCCGCugCUc -3'
miRNA:   3'- caaCGcCUUCCGGU---------CGGUGGCGugGA- -5'
11452 5' -59.8 NC_003085.1 + 9154 0.67 0.379008
Target:  5'- --gGCGGA--GCUcGCCGCCGCGCa- -3'
miRNA:   3'- caaCGCCUucCGGuCGGUGGCGUGga -5'
11452 5' -59.8 NC_003085.1 + 15027 0.66 0.387853
Target:  5'- cUUGCcgcuGGGCCGGCCcaaGCCGCAgCCc -3'
miRNA:   3'- cAACGccu-UCCGGUCGG---UGGCGU-GGa -5'
11452 5' -59.8 NC_003085.1 + 34944 0.66 0.387853
Target:  5'- --gGCGGAGuugcuGGCCGGCgGagGCGCCUc -3'
miRNA:   3'- caaCGCCUU-----CCGGUCGgUggCGUGGA- -5'
11452 5' -59.8 NC_003085.1 + 31333 0.68 0.290913
Target:  5'- --aGCaGAcgucccAGGCCGGCCGucccgcCCGCGCCg -3'
miRNA:   3'- caaCGcCU------UCCGGUCGGU------GGCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 27472 0.69 0.276729
Target:  5'- -gUGCGGGAGGCCA-CC-UCGUcgGCCUg -3'
miRNA:   3'- caACGCCUUCCGGUcGGuGGCG--UGGA- -5'
11452 5' -59.8 NC_003085.1 + 35897 0.69 0.256498
Target:  5'- --cGCGGAgucccaGGGCCAuGCCACgGCcaGCCc -3'
miRNA:   3'- caaCGCCU------UCCGGU-CGGUGgCG--UGGa -5'
11452 5' -59.8 NC_003085.1 + 25154 0.72 0.17298
Target:  5'- --cGCGGuguGGCCGGCgACCGUGgCCUg -3'
miRNA:   3'- caaCGCCuu-CCGGUCGgUGGCGU-GGA- -5'
11452 5' -59.8 NC_003085.1 + 31187 0.71 0.208451
Target:  5'- --gGCGGAAGGCCucauuggcGGUUACCGCgguaucGCCUc -3'
miRNA:   3'- caaCGCCUUCCGG--------UCGGUGGCG------UGGA- -5'
11452 5' -59.8 NC_003085.1 + 20966 0.7 0.225489
Target:  5'- -gUGCGGu-GGCUGGCCuuCCGCaACCUc -3'
miRNA:   3'- caACGCCuuCCGGUCGGu-GGCG-UGGA- -5'
11452 5' -59.8 NC_003085.1 + 40353 0.7 0.225489
Target:  5'- --gGCGGuGGGCaAGCCGCUGCugCc -3'
miRNA:   3'- caaCGCCuUCCGgUCGGUGGCGugGa -5'
11452 5' -59.8 NC_003085.1 + 47829 0.7 0.225489
Target:  5'- cGUUGCGGuuGuGCCAGUCGuCCGCGUCa -3'
miRNA:   3'- -CAACGCCuuC-CGGUCGGU-GGCGUGGa -5'
11452 5' -59.8 NC_003085.1 + 2085 0.7 0.231426
Target:  5'- --cGCGacgaGCgCAGCCGCCGCACCUc -3'
miRNA:   3'- caaCGCcuucCG-GUCGGUGGCGUGGA- -5'
11452 5' -59.8 NC_003085.1 + 16933 0.7 0.243694
Target:  5'- --cGUGGAGGGCaaGGCC-CCGCACa- -3'
miRNA:   3'- caaCGCCUUCCGg-UCGGuGGCGUGga -5'
11452 5' -59.8 NC_003085.1 + 37230 0.69 0.256498
Target:  5'- --gGCGGc---CCAGCCGCCGCGCUc -3'
miRNA:   3'- caaCGCCuuccGGUCGGUGGCGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.