Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11454 | 3' | -54.7 | NC_003085.1 | + | 10601 | 0.66 | 0.711067 |
Target: 5'- aCAUGAugcUGUC-GCCGcGCgCCGUCGCa -3' miRNA: 3'- cGUACU---ACAGcCGGUaCG-GGCAGUGg -5' |
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11454 | 3' | -54.7 | NC_003085.1 | + | 41957 | 0.66 | 0.711067 |
Target: 5'- -gGUGAUGUCcuGCaaccgcucgacgCGgacGCCCGUCACCu -3' miRNA: 3'- cgUACUACAGc-CG------------GUa--CGGGCAGUGG- -5' |
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11454 | 3' | -54.7 | NC_003085.1 | + | 19953 | 0.66 | 0.721835 |
Target: 5'- cGCGU--UGUCuGGcCCAUGgCCG-CGCCa -3' miRNA: 3'- -CGUAcuACAG-CC-GGUACgGGCaGUGG- -5' |
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11454 | 3' | -54.7 | NC_003085.1 | + | 36064 | 0.66 | 0.743088 |
Target: 5'- ------cGUCcaGGUCAUGUCCGUgGCCg -3' miRNA: 3'- cguacuaCAG--CCGGUACGGGCAgUGG- -5' |
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11454 | 3' | -54.7 | NC_003085.1 | + | 41894 | 0.66 | 0.743088 |
Target: 5'- aCGUGAUGaaccccUCGGCCGcGCaaggucgaCGUCACa -3' miRNA: 3'- cGUACUAC------AGCCGGUaCGg-------GCAGUGg -5' |
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11454 | 3' | -54.7 | NC_003085.1 | + | 48751 | 0.66 | 0.743088 |
Target: 5'- gGCGcgGGUGgaccugcucaGGCCGcGCCCGagGCCg -3' miRNA: 3'- -CGUa-CUACag--------CCGGUaCGGGCagUGG- -5' |
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11454 | 3' | -54.7 | NC_003085.1 | + | 40619 | 0.66 | 0.743088 |
Target: 5'- -uGUGcUGaCGGCCGcUGCCguccuCGUCGCCc -3' miRNA: 3'- cgUACuACaGCCGGU-ACGG-----GCAGUGG- -5' |
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11454 | 3' | -54.7 | NC_003085.1 | + | 4830 | 0.66 | 0.732513 |
Target: 5'- uGCAguggGGUGUCaGUC-UGCCgUGUUACCu -3' miRNA: 3'- -CGUa---CUACAGcCGGuACGG-GCAGUGG- -5' |
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11454 | 3' | -54.7 | NC_003085.1 | + | 32940 | 0.66 | 0.711067 |
Target: 5'- gGCAaagGGUGUCGGUaGUGCC-GaCACCc -3' miRNA: 3'- -CGUa--CUACAGCCGgUACGGgCaGUGG- -5' |
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11454 | 3' | -54.7 | NC_003085.1 | + | 38988 | 0.67 | 0.645206 |
Target: 5'- cGCAgcagGUCGGCCA-GCCgaGgggCGCCa -3' miRNA: 3'- -CGUacuaCAGCCGGUaCGGg-Ca--GUGG- -5' |
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11454 | 3' | -54.7 | NC_003085.1 | + | 28694 | 0.67 | 0.689307 |
Target: 5'- aGCG-GAUG-CGGCaCA-GCCCGaaGCCg -3' miRNA: 3'- -CGUaCUACaGCCG-GUaCGGGCagUGG- -5' |
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11454 | 3' | -54.7 | NC_003085.1 | + | 24903 | 0.67 | 0.689307 |
Target: 5'- aCAUGAUgagGUCaGgCAUGUCCG-CGCCg -3' miRNA: 3'- cGUACUA---CAGcCgGUACGGGCaGUGG- -5' |
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11454 | 3' | -54.7 | NC_003085.1 | + | 38398 | 0.67 | 0.678337 |
Target: 5'- uGCAggccGAgGUUGGUgGUguaGCCCGUCACa -3' miRNA: 3'- -CGUa---CUaCAGCCGgUA---CGGGCAGUGg -5' |
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11454 | 3' | -54.7 | NC_003085.1 | + | 27527 | 0.67 | 0.678337 |
Target: 5'- uGCAUGAaGcUGGCgAUGCCgGacagCACCu -3' miRNA: 3'- -CGUACUaCaGCCGgUACGGgCa---GUGG- -5' |
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11454 | 3' | -54.7 | NC_003085.1 | + | 41375 | 0.67 | 0.667324 |
Target: 5'- gGCGUGAUGUUGcGCUccGCUCaugUACCg -3' miRNA: 3'- -CGUACUACAGC-CGGuaCGGGca-GUGG- -5' |
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11454 | 3' | -54.7 | NC_003085.1 | + | 8225 | 0.67 | 0.667324 |
Target: 5'- cGCGUGGcguUGUagaGGCC--GCaCGUCACCg -3' miRNA: 3'- -CGUACU---ACAg--CCGGuaCGgGCAGUGG- -5' |
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11454 | 3' | -54.7 | NC_003085.1 | + | 22138 | 0.67 | 0.678337 |
Target: 5'- ---cGAUGUUGGCCGgguugacCCCGUCgauuucACCg -3' miRNA: 3'- cguaCUACAGCCGGUac-----GGGCAG------UGG- -5' |
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11454 | 3' | -54.7 | NC_003085.1 | + | 47075 | 0.67 | 0.660699 |
Target: 5'- -gGUGuccAUGUCGGCCAcgacgUcaaacucguauucgaGCCCGUCGCg -3' miRNA: 3'- cgUAC---UACAGCCGGU-----A---------------CGGGCAGUGg -5' |
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11454 | 3' | -54.7 | NC_003085.1 | + | 13855 | 0.67 | 0.656276 |
Target: 5'- uGCcgGAUGUgCGGCaacccgcGCCCGgcaaGCCg -3' miRNA: 3'- -CGuaCUACA-GCCGgua----CGGGCag--UGG- -5' |
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11454 | 3' | -54.7 | NC_003085.1 | + | 8612 | 0.67 | 0.667324 |
Target: 5'- cGC-UGGccuccagGUUGGCCA-GCCCGgcCGCCg -3' miRNA: 3'- -CGuACUa------CAGCCGGUaCGGGCa-GUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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