miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11454 3' -54.7 NC_003085.1 + 1465 0.72 0.386064
Target:  5'- cGCAUGAcaccccaaGUC-GCC--GCCCGUCACCg -3'
miRNA:   3'- -CGUACUa-------CAGcCGGuaCGGGCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 1532 0.79 0.131861
Target:  5'- gGCGUGAcuccagcgucugcUGUCgcgaGGCCGUGCgCGUCGCCu -3'
miRNA:   3'- -CGUACU-------------ACAG----CCGGUACGgGCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 2023 0.71 0.441658
Target:  5'- gGCGUGGcgcgaugUGUUccaCCAagUGCCCGUCACCa -3'
miRNA:   3'- -CGUACU-------ACAGcc-GGU--ACGGGCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 2236 0.7 0.513068
Target:  5'- cCAUGGUGgauGCCAUccuccgcGCCCGUCugCa -3'
miRNA:   3'- cGUACUACagcCGGUA-------CGGGCAGugG- -5'
11454 3' -54.7 NC_003085.1 + 4830 0.66 0.732513
Target:  5'- uGCAguggGGUGUCaGUC-UGCCgUGUUACCu -3'
miRNA:   3'- -CGUa---CUACAGcCGGuACGG-GCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 5510 0.68 0.611964
Target:  5'- uGC-UGAcgcGUCGGCaCGUGCUCG-CACUg -3'
miRNA:   3'- -CGuACUa--CAGCCG-GUACGGGCaGUGG- -5'
11454 3' -54.7 NC_003085.1 + 8225 0.67 0.667324
Target:  5'- cGCGUGGcguUGUagaGGCC--GCaCGUCACCg -3'
miRNA:   3'- -CGUACU---ACAg--CCGGuaCGgGCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 8612 0.67 0.667324
Target:  5'- cGC-UGGccuccagGUUGGCCA-GCCCGgcCGCCg -3'
miRNA:   3'- -CGuACUa------CAGCCGGUaCGGGCa-GUGG- -5'
11454 3' -54.7 NC_003085.1 + 8846 0.68 0.597594
Target:  5'- aGCAgGAggggCGGCCAUGacgugcaucggcauCCaCGUCACCg -3'
miRNA:   3'- -CGUaCUaca-GCCGGUAC--------------GG-GCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 10326 0.71 0.432884
Target:  5'- ---cGAUG-CGGCCcccGCCaCGUCGCCu -3'
miRNA:   3'- cguaCUACaGCCGGua-CGG-GCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 10601 0.66 0.711067
Target:  5'- aCAUGAugcUGUC-GCCGcGCgCCGUCGCa -3'
miRNA:   3'- cGUACU---ACAGcCGGUaCG-GGCAGUGg -5'
11454 3' -54.7 NC_003085.1 + 13727 0.69 0.557033
Target:  5'- aGCGagGAcaUCGGCCAcccUGCCC-UCGCCg -3'
miRNA:   3'- -CGUa-CUacAGCCGGU---ACGGGcAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 13855 0.67 0.656276
Target:  5'- uGCcgGAUGUgCGGCaacccgcGCCCGgcaaGCCg -3'
miRNA:   3'- -CGuaCUACA-GCCGgua----CGGGCag--UGG- -5'
11454 3' -54.7 NC_003085.1 + 18156 0.68 0.589875
Target:  5'- gGCuucGGUGUCGGgCGcgccUGCCCGcgcUUACCg -3'
miRNA:   3'- -CGua-CUACAGCCgGU----ACGGGC---AGUGG- -5'
11454 3' -54.7 NC_003085.1 + 19953 0.66 0.721835
Target:  5'- cGCGU--UGUCuGGcCCAUGgCCG-CGCCa -3'
miRNA:   3'- -CGUAcuACAG-CC-GGUACgGGCaGUGG- -5'
11454 3' -54.7 NC_003085.1 + 22138 0.67 0.678337
Target:  5'- ---cGAUGUUGGCCGgguugacCCCGUCgauuucACCg -3'
miRNA:   3'- cguaCUACAGCCGGUac-----GGGCAG------UGG- -5'
11454 3' -54.7 NC_003085.1 + 23367 0.69 0.56793
Target:  5'- gGCAgccGUGUCccaGGCCAUGC--GUCACCg -3'
miRNA:   3'- -CGUac-UACAG---CCGGUACGggCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 24095 0.81 0.099614
Target:  5'- aGCccGccGUCGG-CGUGCCCGUCACCg -3'
miRNA:   3'- -CGuaCuaCAGCCgGUACGGGCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 24795 0.68 0.611964
Target:  5'- aCAUGGUGcCGcUCA-GCCCGUCGCg -3'
miRNA:   3'- cGUACUACaGCcGGUaCGGGCAGUGg -5'
11454 3' -54.7 NC_003085.1 + 24903 0.67 0.689307
Target:  5'- aCAUGAUgagGUCaGgCAUGUCCG-CGCCg -3'
miRNA:   3'- cGUACUA---CAGcCgGUACGGGCaGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.