miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11454 3' -54.7 NC_003085.1 + 27875 1.14 0.000463
Target:  5'- cGCAUGAUGUCGGCCAUGCCCGUCACCu -3'
miRNA:   3'- -CGUACUACAGCCGGUACGGGCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 24095 0.81 0.099614
Target:  5'- aGCccGccGUCGG-CGUGCCCGUCACCg -3'
miRNA:   3'- -CGuaCuaCAGCCgGUACGGGCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 1532 0.79 0.131861
Target:  5'- gGCGUGAcuccagcgucugcUGUCgcgaGGCCGUGCgCGUCGCCu -3'
miRNA:   3'- -CGUACU-------------ACAG----CCGGUACGgGCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 34666 0.76 0.222307
Target:  5'- cGCGgagGAUGUCGGCCuuuUGCaccCCG-CGCCg -3'
miRNA:   3'- -CGUa--CUACAGCCGGu--ACG---GGCaGUGG- -5'
11454 3' -54.7 NC_003085.1 + 26968 0.74 0.280894
Target:  5'- ---cGAUGUCGGUgccGUCCGUCGCCa -3'
miRNA:   3'- cguaCUACAGCCGguaCGGGCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 33685 0.72 0.377109
Target:  5'- cGCAUGccgGUCagacucccuuGGCCcuggaGUGCCCGUCaACCg -3'
miRNA:   3'- -CGUACua-CAG----------CCGG-----UACGGGCAG-UGG- -5'
11454 3' -54.7 NC_003085.1 + 1465 0.72 0.386064
Target:  5'- cGCAUGAcaccccaaGUC-GCC--GCCCGUCACCg -3'
miRNA:   3'- -CGUACUa-------CAGcCGGuaCGGGCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 10326 0.71 0.432884
Target:  5'- ---cGAUG-CGGCCcccGCCaCGUCGCCu -3'
miRNA:   3'- cguaCUACaGCCGGua-CGG-GCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 2023 0.71 0.441658
Target:  5'- gGCGUGGcgcgaugUGUUccaCCAagUGCCCGUCACCa -3'
miRNA:   3'- -CGUACU-------ACAGcc-GGU--ACGGGCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 30891 0.71 0.452517
Target:  5'- uGC-UGAUGgacagcgcUUGGCCGuccuUGCCCGcCACCu -3'
miRNA:   3'- -CGuACUAC--------AGCCGGU----ACGGGCaGUGG- -5'
11454 3' -54.7 NC_003085.1 + 25091 0.71 0.453511
Target:  5'- gGCcauUGAUGgcccggccgccaaaGGCCGU-CCCGUCGCCg -3'
miRNA:   3'- -CGu--ACUACag------------CCGGUAcGGGCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 34118 0.7 0.493175
Target:  5'- uGCAgGGUGUUGcGUCGgaUGCCCGUCucacGCCc -3'
miRNA:   3'- -CGUaCUACAGC-CGGU--ACGGGCAG----UGG- -5'
11454 3' -54.7 NC_003085.1 + 2236 0.7 0.513068
Target:  5'- cCAUGGUGgauGCCAUccuccgcGCCCGUCugCa -3'
miRNA:   3'- cGUACUACagcCGGUA-------CGGGCAGugG- -5'
11454 3' -54.7 NC_003085.1 + 46374 0.69 0.524735
Target:  5'- ---cGccGUCGGCCugcgGCUCGUCACg -3'
miRNA:   3'- cguaCuaCAGCCGGua--CGGGCAGUGg -5'
11454 3' -54.7 NC_003085.1 + 36020 0.69 0.539726
Target:  5'- gGCG-GAUGgCGGCCAUGggcacgccguaugccCCCGUCuuCCg -3'
miRNA:   3'- -CGUaCUACaGCCGGUAC---------------GGGCAGu-GG- -5'
11454 3' -54.7 NC_003085.1 + 26674 0.69 0.546196
Target:  5'- gGCggGAg--CGGCCGuUGCcgcugCCGUCGCCa -3'
miRNA:   3'- -CGuaCUacaGCCGGU-ACG-----GGCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 13727 0.69 0.557033
Target:  5'- aGCGagGAcaUCGGCCAcccUGCCC-UCGCCg -3'
miRNA:   3'- -CGUa-CUacAGCCGGU---ACGGGcAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 23367 0.69 0.56793
Target:  5'- gGCAgccGUGUCccaGGCCAUGC--GUCACCg -3'
miRNA:   3'- -CGUac-UACAG---CCGGUACGggCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 25265 0.69 0.56793
Target:  5'- gGCGUcGUcGUCGGCgc-GCCCGUCuACCu -3'
miRNA:   3'- -CGUAcUA-CAGCCGguaCGGGCAG-UGG- -5'
11454 3' -54.7 NC_003085.1 + 18156 0.68 0.589875
Target:  5'- gGCuucGGUGUCGGgCGcgccUGCCCGcgcUUACCg -3'
miRNA:   3'- -CGua-CUACAGCCgGU----ACGGGC---AGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.