miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11454 5' -58.4 NC_003085.1 + 1931 0.66 0.540568
Target:  5'- uCGcUCGCGGGCUCGuCGgucCCGGUGGcCg -3'
miRNA:   3'- cGCaGGUGCUCGAGC-GC---GGCCAUCaG- -5'
11454 5' -58.4 NC_003085.1 + 11763 0.66 0.540568
Target:  5'- cGCGUCUACGAcgguacggcgGCgccgCGCuCCGGgcguGUCg -3'
miRNA:   3'- -CGCAGGUGCU----------CGa---GCGcGGCCau--CAG- -5'
11454 5' -58.4 NC_003085.1 + 9144 0.66 0.540568
Target:  5'- aGCGgcaCCugGcggAGCUCGcCGCCGcGcAGUCc -3'
miRNA:   3'- -CGCa--GGugC---UCGAGC-GCGGC-CaUCAG- -5'
11454 5' -58.4 NC_003085.1 + 35899 0.66 0.529063
Target:  5'- aCGUCCACGcgcgccuuGCUCGCcUCGGUGugaacccGUCg -3'
miRNA:   3'- cGCAGGUGCu-------CGAGCGcGGCCAU-------CAG- -5'
11454 5' -58.4 NC_003085.1 + 39073 0.66 0.519717
Target:  5'- cGUGUCCACGu-CUCcuuCG-CGGUAGUCa -3'
miRNA:   3'- -CGCAGGUGCucGAGc--GCgGCCAUCAG- -5'
11454 5' -58.4 NC_003085.1 + 11179 0.66 0.49919
Target:  5'- gGCaaagCC-CGAGCUCGCGCCauccGUcGUCg -3'
miRNA:   3'- -CGca--GGuGCUCGAGCGCGGc---CAuCAG- -5'
11454 5' -58.4 NC_003085.1 + 40021 0.66 0.49919
Target:  5'- uCGUCCAUGAGCgccggcacgucCGCGUCguGGUAGg- -3'
miRNA:   3'- cGCAGGUGCUCGa----------GCGCGG--CCAUCag -5'
11454 5' -58.4 NC_003085.1 + 5516 0.67 0.489062
Target:  5'- cGCGUCggCACGuGCUCGCaCUGGUGc-- -3'
miRNA:   3'- -CGCAG--GUGCuCGAGCGcGGCCAUcag -5'
11454 5' -58.4 NC_003085.1 + 815 0.67 0.489062
Target:  5'- aCGUCCGCGuGC-CGCcGCaGGUcGUCg -3'
miRNA:   3'- cGCAGGUGCuCGaGCG-CGgCCAuCAG- -5'
11454 5' -58.4 NC_003085.1 + 7545 0.67 0.488054
Target:  5'- cGUGggCACGGGCUacacgcccgagaaUGCGCUGG-AGUCg -3'
miRNA:   3'- -CGCagGUGCUCGA-------------GCGCGGCCaUCAG- -5'
11454 5' -58.4 NC_003085.1 + 27708 0.67 0.478034
Target:  5'- gGCGUCCGCccGCugUCGCGCCucguugcuggcgaGGUGGa- -3'
miRNA:   3'- -CGCAGGUGcuCG--AGCGCGG-------------CCAUCag -5'
11454 5' -58.4 NC_003085.1 + 28842 0.67 0.45928
Target:  5'- cGCGUCCGCGAa---GCGCCGGc---- -3'
miRNA:   3'- -CGCAGGUGCUcgagCGCGGCCaucag -5'
11454 5' -58.4 NC_003085.1 + 39490 0.67 0.449569
Target:  5'- cGCGUCgAgGcGCUCGagaaGCCGGUGcgccucGUCg -3'
miRNA:   3'- -CGCAGgUgCuCGAGCg---CGGCCAU------CAG- -5'
11454 5' -58.4 NC_003085.1 + 40314 0.68 0.427671
Target:  5'- cGCGgCgGCGAGCUC-CGCCaGGUgccgcucccagagaGGUCg -3'
miRNA:   3'- -CGCaGgUGCUCGAGcGCGG-CCA--------------UCAG- -5'
11454 5' -58.4 NC_003085.1 + 34545 0.68 0.421133
Target:  5'- aGCG-CCACGcGCUgGCGgCCGGUGc-- -3'
miRNA:   3'- -CGCaGGUGCuCGAgCGC-GGCCAUcag -5'
11454 5' -58.4 NC_003085.1 + 27014 0.69 0.38496
Target:  5'- gGUGUagACGGGCUgGCGCUccucgacggacuGGUAGUCc -3'
miRNA:   3'- -CGCAggUGCUCGAgCGCGG------------CCAUCAG- -5'
11454 5' -58.4 NC_003085.1 + 8139 0.69 0.376244
Target:  5'- -aGUCCcCGGGCUucggCGUGUCGGUGGg- -3'
miRNA:   3'- cgCAGGuGCUCGA----GCGCGGCCAUCag -5'
11454 5' -58.4 NC_003085.1 + 28609 0.7 0.334697
Target:  5'- gGCGgcaccgcagCgGCGAGCUCgGCGCCGGUcGcCu -3'
miRNA:   3'- -CGCa--------GgUGCUCGAG-CGCGGCCAuCaG- -5'
11454 5' -58.4 NC_003085.1 + 13623 0.7 0.334697
Target:  5'- uCGUCUACGAGCgccugGCGCCGG-AGc- -3'
miRNA:   3'- cGCAGGUGCUCGag---CGCGGCCaUCag -5'
11454 5' -58.4 NC_003085.1 + 19953 0.71 0.289405
Target:  5'- cGCGUugucuggcCCAUG-GC-CGCGCCaaGGUAGUCa -3'
miRNA:   3'- -CGCA--------GGUGCuCGaGCGCGG--CCAUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.