Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11455 | 3' | -61 | NC_003085.1 | + | 42739 | 0.66 | 0.424382 |
Target: 5'- uCGGGGCGAuGCGGGCgcgguggacggcaucCAUCgccgCGUCg- -3' miRNA: 3'- -GCUCCGCUuCGCCCG---------------GUGGa---GCAGga -5' |
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11455 | 3' | -61 | NC_003085.1 | + | 43836 | 0.66 | 0.420708 |
Target: 5'- uGAGGuCGcgcAGGCGGGCguUCUCcUCCUc -3' miRNA: 3'- gCUCC-GC---UUCGCCCGguGGAGcAGGA- -5' |
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11455 | 3' | -61 | NC_003085.1 | + | 23680 | 0.66 | 0.385064 |
Target: 5'- -cAGGCGuccacgcAGCGGGCCcgcgcagcaGCCUCcUCCg -3' miRNA: 3'- gcUCCGCu------UCGCCCGG---------UGGAGcAGGa -5' |
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11455 | 3' | -61 | NC_003085.1 | + | 35071 | 0.66 | 0.385064 |
Target: 5'- uGGGGCccuAGCGGGUCugccCCUCaUCCg -3' miRNA: 3'- gCUCCGcu-UCGCCCGGu---GGAGcAGGa -5' |
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11455 | 3' | -61 | NC_003085.1 | + | 20286 | 0.66 | 0.420708 |
Target: 5'- uGAGGCGAAGCccaaGGCCguGCCcaacgCGcCCg -3' miRNA: 3'- gCUCCGCUUCGc---CCGG--UGGa----GCaGGa -5' |
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11455 | 3' | -61 | NC_003085.1 | + | 34187 | 0.66 | 0.37647 |
Target: 5'- aCGcGGGCGcGGCGGGUgAgCUCGgCCg -3' miRNA: 3'- -GC-UCCGCuUCGCCCGgUgGAGCaGGa -5' |
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11455 | 3' | -61 | NC_003085.1 | + | 47657 | 0.66 | 0.399968 |
Target: 5'- gGGGGCGcaccAGUcccggccagccaacGGGCCACCU-GUCCc -3' miRNA: 3'- gCUCCGCu---UCG--------------CCCGGUGGAgCAGGa -5' |
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11455 | 3' | -61 | NC_003085.1 | + | 17518 | 0.66 | 0.401745 |
Target: 5'- cCGAGGaccuguccggugaUGAAGgcacCGGGCUgcugcucccguGCCUCGUCCg -3' miRNA: 3'- -GCUCC-------------GCUUC----GCCCGG-----------UGGAGCAGGa -5' |
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11455 | 3' | -61 | NC_003085.1 | + | 30365 | 0.66 | 0.420708 |
Target: 5'- uGAcaGCGAAGCGGGUgcggcgCACUcCGUCCg -3' miRNA: 3'- gCUc-CGCUUCGCCCG------GUGGaGCAGGa -5' |
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11455 | 3' | -61 | NC_003085.1 | + | 47155 | 0.66 | 0.411611 |
Target: 5'- cCGGuGGCGAGGCaGGCCAgCgcCGUgCUg -3' miRNA: 3'- -GCU-CCGCUUCGcCCGGUgGa-GCAgGA- -5' |
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11455 | 3' | -61 | NC_003085.1 | + | 28185 | 0.66 | 0.401745 |
Target: 5'- -cAGGaCGAAGUcuGGGCgcggcacCACCUUGUCCg -3' miRNA: 3'- gcUCC-GCUUCG--CCCG-------GUGGAGCAGGa -5' |
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11455 | 3' | -61 | NC_003085.1 | + | 2650 | 0.66 | 0.402636 |
Target: 5'- gCGAGGUGAugccgcccaaGGaCGuGGCCACCgucaUCGUCg- -3' miRNA: 3'- -GCUCCGCU----------UC-GC-CCGGUGG----AGCAGga -5' |
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11455 | 3' | -61 | NC_003085.1 | + | 1638 | 0.67 | 0.368006 |
Target: 5'- gGAGGCGuAGUcauGGCCugC-CGUCCc -3' miRNA: 3'- gCUCCGCuUCGc--CCGGugGaGCAGGa -5' |
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11455 | 3' | -61 | NC_003085.1 | + | 48447 | 0.67 | 0.351475 |
Target: 5'- gCGAGGCcgcGAGCauaGGCCACCUCaG-CCUu -3' miRNA: 3'- -GCUCCGc--UUCGc--CCGGUGGAG-CaGGA- -5' |
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11455 | 3' | -61 | NC_003085.1 | + | 9153 | 0.67 | 0.351475 |
Target: 5'- --uGGCGGAGCucGCCGCCgcgcaGUCCUg -3' miRNA: 3'- gcuCCGCUUCGccCGGUGGag---CAGGA- -5' |
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11455 | 3' | -61 | NC_003085.1 | + | 31735 | 0.67 | 0.343409 |
Target: 5'- aCGAgauuGGCGGAcucauCGGGCgCACCuUCGUCCc -3' miRNA: 3'- -GCU----CCGCUUc----GCCCG-GUGG-AGCAGGa -5' |
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11455 | 3' | -61 | NC_003085.1 | + | 33643 | 0.67 | 0.327681 |
Target: 5'- -cAGGCGAAGaGGGCCACggCGgCCa -3' miRNA: 3'- gcUCCGCUUCgCCCGGUGgaGCaGGa -5' |
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11455 | 3' | -61 | NC_003085.1 | + | 48525 | 0.67 | 0.327681 |
Target: 5'- uCGGcGGCGAGggcGCGGGCCuuCCa-GUCCUc -3' miRNA: 3'- -GCU-CCGCUU---CGCCCGGu-GGagCAGGA- -5' |
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11455 | 3' | -61 | NC_003085.1 | + | 34301 | 0.67 | 0.327681 |
Target: 5'- cCGA-GCGucGCGGGCagggCACCgaggCGUCCa -3' miRNA: 3'- -GCUcCGCuuCGCCCG----GUGGa---GCAGGa -5' |
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11455 | 3' | -61 | NC_003085.1 | + | 22920 | 0.67 | 0.327681 |
Target: 5'- cCGGGGCGAAGCccuccgaGGCCGCgUCGa--- -3' miRNA: 3'- -GCUCCGCUUCGc------CCGGUGgAGCagga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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