miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11455 3' -61 NC_003085.1 + 27768 1.08 0.00032
Target:  5'- cCGAGGCGAAGCGGGCCACCUCGUCCUg -3'
miRNA:   3'- -GCUCCGCUUCGCCCGGUGGAGCAGGA- -5'
11455 3' -61 NC_003085.1 + 30766 0.78 0.055447
Target:  5'- -cAGGCGggGCGGGCCACUgaccggCGUCa- -3'
miRNA:   3'- gcUCCGCuuCGCCCGGUGGa-----GCAGga -5'
11455 3' -61 NC_003085.1 + 19711 0.76 0.079758
Target:  5'- aCGAGGUGggGCGcgacGGCgGCCaCGUCCUg -3'
miRNA:   3'- -GCUCCGCuuCGC----CCGgUGGaGCAGGA- -5'
11455 3' -61 NC_003085.1 + 1255 0.76 0.081775
Target:  5'- gGAGGCaGGuggccgaauccaaGGUGGGCCACCUCGUgCg -3'
miRNA:   3'- gCUCCG-CU-------------UCGCCCGGUGGAGCAgGa -5'
11455 3' -61 NC_003085.1 + 26494 0.73 0.137852
Target:  5'- gGGGGUGGcAGacuGGGCCGgCUCGUCCg -3'
miRNA:   3'- gCUCCGCU-UCg--CCCGGUgGAGCAGGa -5'
11455 3' -61 NC_003085.1 + 18411 0.72 0.170553
Target:  5'- cCGAGGCGAAGCgacuggccgacaGGGCCuuuGCCcgCGUCg- -3'
miRNA:   3'- -GCUCCGCUUCG------------CCCGG---UGGa-GCAGga -5'
11455 3' -61 NC_003085.1 + 42381 0.71 0.175098
Target:  5'- uCGGcGGCauGAGcGCGGGCCuuguccuCCUCGUCCa -3'
miRNA:   3'- -GCU-CCG--CUU-CGCCCGGu------GGAGCAGGa -5'
11455 3' -61 NC_003085.1 + 30702 0.71 0.187421
Target:  5'- gGAGGCGAAGCGGcGCaagggggaagcggACCggCGUCCc -3'
miRNA:   3'- gCUCCGCUUCGCC-CGg------------UGGa-GCAGGa -5'
11455 3' -61 NC_003085.1 + 17669 0.71 0.194369
Target:  5'- cCGucGCGAgcGGcCGGGCCGCUUCGcCCa -3'
miRNA:   3'- -GCucCGCU--UC-GCCCGGUGGAGCaGGa -5'
11455 3' -61 NC_003085.1 + 16891 0.7 0.210018
Target:  5'- aCGAGGCcGAGCGaugaGCCACCUCGcaccCCa -3'
miRNA:   3'- -GCUCCGcUUCGCc---CGGUGGAGCa---GGa -5'
11455 3' -61 NC_003085.1 + 6932 0.7 0.210018
Target:  5'- cCGAGGCGAAGCGGGagGCCacgcagguggCGUgCg -3'
miRNA:   3'- -GCUCCGCUUCGCCCggUGGa---------GCAgGa -5'
11455 3' -61 NC_003085.1 + 3097 0.69 0.250777
Target:  5'- cCGcAGGcCGAcGGCGGaugaacuugccGCCAUCUCGUCCg -3'
miRNA:   3'- -GC-UCC-GCU-UCGCC-----------CGGUGGAGCAGGa -5'
11455 3' -61 NC_003085.1 + 46949 0.69 0.250777
Target:  5'- aGGGGcCGAcGCGGGCaCACCgucCGUCa- -3'
miRNA:   3'- gCUCC-GCUuCGCCCG-GUGGa--GCAGga -5'
11455 3' -61 NC_003085.1 + 25362 0.69 0.256467
Target:  5'- gGAcGGUGAcgggcacgccgacGGCGGGCuuCACCgUCGUCCa -3'
miRNA:   3'- gCU-CCGCU-------------UCGCCCG--GUGG-AGCAGGa -5'
11455 3' -61 NC_003085.1 + 45895 0.69 0.26949
Target:  5'- gCGAGGCGcgcuuGCGcccGGCCGCCUUgagcgugGUCCa -3'
miRNA:   3'- -GCUCCGCuu---CGC---CCGGUGGAG-------CAGGa -5'
11455 3' -61 NC_003085.1 + 39494 0.69 0.276877
Target:  5'- uCGAGGCgcucgaGAAGCcGGUgCGCCUCGUCgCUg -3'
miRNA:   3'- -GCUCCG------CUUCGcCCG-GUGGAGCAG-GA- -5'
11455 3' -61 NC_003085.1 + 562 0.68 0.297124
Target:  5'- gCGAGGCGGcgcggcuGGCGGGCCAaugC-UCCg -3'
miRNA:   3'- -GCUCCGCU-------UCGCCCGGUggaGcAGGa -5'
11455 3' -61 NC_003085.1 + 19412 0.68 0.305099
Target:  5'- -aAGGCccaGGGCGGcGCCACCUgGUUCg -3'
miRNA:   3'- gcUCCGc--UUCGCC-CGGUGGAgCAGGa -5'
11455 3' -61 NC_003085.1 + 26094 0.68 0.312492
Target:  5'- uGGGGuCGAAGUgcugGGGCUgcGCCUCGgcggCCg -3'
miRNA:   3'- gCUCC-GCUUCG----CCCGG--UGGAGCa---GGa -5'
11455 3' -61 NC_003085.1 + 7684 0.68 0.312492
Target:  5'- gGGGGCGAAGgguaccggcUGGGCUuccaggcugGCCgggCGUCCg -3'
miRNA:   3'- gCUCCGCUUC---------GCCCGG---------UGGa--GCAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.