miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11455 3' -61 NC_003085.1 + 562 0.68 0.297124
Target:  5'- gCGAGGCGGcgcggcuGGCGGGCCAaugC-UCCg -3'
miRNA:   3'- -GCUCCGCU-------UCGCCCGGUggaGcAGGa -5'
11455 3' -61 NC_003085.1 + 1255 0.76 0.081775
Target:  5'- gGAGGCaGGuggccgaauccaaGGUGGGCCACCUCGUgCg -3'
miRNA:   3'- gCUCCG-CU-------------UCGCCCGGUGGAGCAgGa -5'
11455 3' -61 NC_003085.1 + 1638 0.67 0.368006
Target:  5'- gGAGGCGuAGUcauGGCCugC-CGUCCc -3'
miRNA:   3'- gCUCCGCuUCGc--CCGGugGaGCAGGa -5'
11455 3' -61 NC_003085.1 + 2650 0.66 0.402636
Target:  5'- gCGAGGUGAugccgcccaaGGaCGuGGCCACCgucaUCGUCg- -3'
miRNA:   3'- -GCUCCGCU----------UC-GC-CCGGUGG----AGCAGga -5'
11455 3' -61 NC_003085.1 + 3097 0.69 0.250777
Target:  5'- cCGcAGGcCGAcGGCGGaugaacuugccGCCAUCUCGUCCg -3'
miRNA:   3'- -GC-UCC-GCU-UCGCC-----------CGGUGGAGCAGGa -5'
11455 3' -61 NC_003085.1 + 6932 0.7 0.210018
Target:  5'- cCGAGGCGAAGCGGGagGCCacgcagguggCGUgCg -3'
miRNA:   3'- -GCUCCGCUUCGCCCggUGGa---------GCAgGa -5'
11455 3' -61 NC_003085.1 + 7684 0.68 0.312492
Target:  5'- gGGGGCGAAGgguaccggcUGGGCUuccaggcugGCCgggCGUCCg -3'
miRNA:   3'- gCUCCGCUUC---------GCCCGG---------UGGa--GCAGGa -5'
11455 3' -61 NC_003085.1 + 9153 0.67 0.351475
Target:  5'- --uGGCGGAGCucGCCGCCgcgcaGUCCUg -3'
miRNA:   3'- gcuCCGCUUCGccCGGUGGag---CAGGA- -5'
11455 3' -61 NC_003085.1 + 16891 0.7 0.210018
Target:  5'- aCGAGGCcGAGCGaugaGCCACCUCGcaccCCa -3'
miRNA:   3'- -GCUCCGcUUCGCc---CGGUGGAGCa---GGa -5'
11455 3' -61 NC_003085.1 + 17518 0.66 0.401745
Target:  5'- cCGAGGaccuguccggugaUGAAGgcacCGGGCUgcugcucccguGCCUCGUCCg -3'
miRNA:   3'- -GCUCC-------------GCUUC----GCCCGG-----------UGGAGCAGGa -5'
11455 3' -61 NC_003085.1 + 17669 0.71 0.194369
Target:  5'- cCGucGCGAgcGGcCGGGCCGCUUCGcCCa -3'
miRNA:   3'- -GCucCGCU--UC-GCCCGGUGGAGCaGGa -5'
11455 3' -61 NC_003085.1 + 18411 0.72 0.170553
Target:  5'- cCGAGGCGAAGCgacuggccgacaGGGCCuuuGCCcgCGUCg- -3'
miRNA:   3'- -GCUCCGCUUCG------------CCCGG---UGGa-GCAGga -5'
11455 3' -61 NC_003085.1 + 19412 0.68 0.305099
Target:  5'- -aAGGCccaGGGCGGcGCCACCUgGUUCg -3'
miRNA:   3'- gcUCCGc--UUCGCC-CGGUGGAgCAGGa -5'
11455 3' -61 NC_003085.1 + 19711 0.76 0.079758
Target:  5'- aCGAGGUGggGCGcgacGGCgGCCaCGUCCUg -3'
miRNA:   3'- -GCUCCGCuuCGC----CCGgUGGaGCAGGA- -5'
11455 3' -61 NC_003085.1 + 19881 0.67 0.343409
Target:  5'- aGAGGCGAcauucaUGaGGCCGCCgaagaCGUCCg -3'
miRNA:   3'- gCUCCGCUuc----GC-CCGGUGGa----GCAGGa -5'
11455 3' -61 NC_003085.1 + 20286 0.66 0.420708
Target:  5'- uGAGGCGAAGCccaaGGCCguGCCcaacgCGcCCg -3'
miRNA:   3'- gCUCCGCUUCGc---CCGG--UGGa----GCaGGa -5'
11455 3' -61 NC_003085.1 + 22920 0.67 0.327681
Target:  5'- cCGGGGCGAAGCccuccgaGGCCGCgUCGa--- -3'
miRNA:   3'- -GCUCCGCUUCGc------CCGGUGgAGCagga -5'
11455 3' -61 NC_003085.1 + 23680 0.66 0.385064
Target:  5'- -cAGGCGuccacgcAGCGGGCCcgcgcagcaGCCUCcUCCg -3'
miRNA:   3'- gcUCCGCu------UCGCCCGG---------UGGAGcAGGa -5'
11455 3' -61 NC_003085.1 + 25362 0.69 0.256467
Target:  5'- gGAcGGUGAcgggcacgccgacGGCGGGCuuCACCgUCGUCCa -3'
miRNA:   3'- gCU-CCGCU-------------UCGCCCG--GUGG-AGCAGGa -5'
11455 3' -61 NC_003085.1 + 26094 0.68 0.312492
Target:  5'- uGGGGuCGAAGUgcugGGGCUgcGCCUCGgcggCCg -3'
miRNA:   3'- gCUCC-GCUUCG----CCCGG--UGGAGCa---GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.