Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11455 | 5' | -53.6 | NC_003085.1 | + | 27802 | 1.11 | 0.000885 |
Target: 5'- cUGAAGCCGGAUGCUGCCGAACUUCGCc -3' miRNA: 3'- -ACUUCGGCCUACGACGGCUUGAAGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 23217 | 0.75 | 0.27797 |
Target: 5'- aGuGGCCGGGcUGCUccagacggccGCCGcGCUUCGCa -3' miRNA: 3'- aCuUCGGCCU-ACGA----------CGGCuUGAAGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 12032 | 0.74 | 0.332033 |
Target: 5'- ---uGCCGG-UGCUGCgCGAcuucgugcgccGCUUCGCg -3' miRNA: 3'- acuuCGGCCuACGACG-GCU-----------UGAAGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 22490 | 0.73 | 0.348835 |
Target: 5'- --cAGCCGGcUGCgcagGCCGAGCUcggaCGCg -3' miRNA: 3'- acuUCGGCCuACGa---CGGCUUGAa---GCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 14867 | 0.72 | 0.393435 |
Target: 5'- aGAAGCaGGAcgUGCUGCCGGACaccUUCa- -3' miRNA: 3'- aCUUCGgCCU--ACGACGGCUUG---AAGcg -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 44235 | 0.72 | 0.402788 |
Target: 5'- gGAGGCCGcuucCUGCCGGGCcgcgUCGCg -3' miRNA: 3'- aCUUCGGCcuacGACGGCUUGa---AGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 14022 | 0.72 | 0.412281 |
Target: 5'- -cGAGUCGGuagGaCUGCCGAGCUacugCGCg -3' miRNA: 3'- acUUCGGCCua-C-GACGGCUUGAa---GCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 12389 | 0.72 | 0.431676 |
Target: 5'- gGAagGGCCGGGUGCUGCUGcucGACccgGCg -3' miRNA: 3'- aCU--UCGGCCUACGACGGC---UUGaagCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 20752 | 0.72 | 0.441571 |
Target: 5'- aGGA-CCGGcUGCUGCCcGGCUUCGg -3' miRNA: 3'- aCUUcGGCCuACGACGGcUUGAAGCg -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 9363 | 0.71 | 0.451593 |
Target: 5'- cGAGGUCGGggGaCUcGCUGAACUUCa- -3' miRNA: 3'- aCUUCGGCCuaC-GA-CGGCUUGAAGcg -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 11127 | 0.71 | 0.457666 |
Target: 5'- uUGggGCgcgcgucgucucuCGGAUG-UGCCGAcaggggaccuaccuGCUUCGCg -3' miRNA: 3'- -ACuuCG-------------GCCUACgACGGCU--------------UGAAGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 47368 | 0.7 | 0.51415 |
Target: 5'- aUGgcGCCGaGGUGCggcgGCUGcGCUcgUCGCg -3' miRNA: 3'- -ACuuCGGC-CUACGa---CGGCuUGA--AGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 11378 | 0.69 | 0.55775 |
Target: 5'- cGgcGCCGGAcaccugcGCUGCCGu-CUcCGCg -3' miRNA: 3'- aCuuCGGCCUa------CGACGGCuuGAaGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 47966 | 0.69 | 0.591127 |
Target: 5'- cGAGcGCCGGAcggGCcgcGUCGAGCaagUCGCg -3' miRNA: 3'- aCUU-CGGCCUa--CGa--CGGCUUGa--AGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 11084 | 0.69 | 0.591127 |
Target: 5'- cUGggGCCaaauaGGAUGUcGCCGGcgGCaUUCGUg -3' miRNA: 3'- -ACuuCGG-----CCUACGaCGGCU--UG-AAGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 16537 | 0.69 | 0.602338 |
Target: 5'- -uGAGCCGGucgccGUUGCCGca-UUCGCg -3' miRNA: 3'- acUUCGGCCua---CGACGGCuugAAGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 2371 | 0.69 | 0.602338 |
Target: 5'- cGAGGCCGcg-GC-GCgCGAGCUcUCGCa -3' miRNA: 3'- aCUUCGGCcuaCGaCG-GCUUGA-AGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 20366 | 0.69 | 0.613575 |
Target: 5'- gGAgcGGCCGGAUaugaaugagucGCaGCCcacaGACUUCGCg -3' miRNA: 3'- aCU--UCGGCCUA-----------CGaCGGc---UUGAAGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 2849 | 0.69 | 0.613575 |
Target: 5'- gUGuuGCCGGGaGgaGCCGAugauGCUgaagCGCa -3' miRNA: 3'- -ACuuCGGCCUaCgaCGGCU----UGAa---GCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 28866 | 0.68 | 0.624829 |
Target: 5'- cGAcuuCCGcGgcGCUGCCGAGCagcagUCGCa -3' miRNA: 3'- aCUuc-GGC-CuaCGACGGCUUGa----AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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