miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11455 5' -53.6 NC_003085.1 + 1038 0.66 0.788109
Target:  5'- uUGAAGCa-GAagGC-GCCGAACUgccCGCg -3'
miRNA:   3'- -ACUUCGgcCUa-CGaCGGCUUGAa--GCG- -5'
11455 5' -53.6 NC_003085.1 + 2371 0.69 0.602338
Target:  5'- cGAGGCCGcg-GC-GCgCGAGCUcUCGCa -3'
miRNA:   3'- aCUUCGGCcuaCGaCG-GCUUGA-AGCG- -5'
11455 5' -53.6 NC_003085.1 + 2849 0.69 0.613575
Target:  5'- gUGuuGCCGGGaGgaGCCGAugauGCUgaagCGCa -3'
miRNA:   3'- -ACuuCGGCCUaCgaCGGCU----UGAa---GCG- -5'
11455 5' -53.6 NC_003085.1 + 3408 0.66 0.788109
Target:  5'- cGAAgGgCGGGUGCaGCCGua--UCGCg -3'
miRNA:   3'- aCUU-CgGCCUACGaCGGCuugaAGCG- -5'
11455 5' -53.6 NC_003085.1 + 6298 0.66 0.788109
Target:  5'- gUGGAGCgacUGGA-GCagGCCGAGCgggaaccgCGCa -3'
miRNA:   3'- -ACUUCG---GCCUaCGa-CGGCUUGaa------GCG- -5'
11455 5' -53.6 NC_003085.1 + 7130 0.66 0.777961
Target:  5'- gGAAGuCCaGGAUGCUGgCGAcCUgUGUg -3'
miRNA:   3'- aCUUC-GG-CCUACGACgGCUuGAaGCG- -5'
11455 5' -53.6 NC_003085.1 + 9363 0.71 0.451593
Target:  5'- cGAGGUCGGggGaCUcGCUGAACUUCa- -3'
miRNA:   3'- aCUUCGGCCuaC-GA-CGGCUUGAAGcg -5'
11455 5' -53.6 NC_003085.1 + 11084 0.69 0.591127
Target:  5'- cUGggGCCaaauaGGAUGUcGCCGGcgGCaUUCGUg -3'
miRNA:   3'- -ACuuCGG-----CCUACGaCGGCU--UG-AAGCG- -5'
11455 5' -53.6 NC_003085.1 + 11127 0.71 0.457666
Target:  5'- uUGggGCgcgcgucgucucuCGGAUG-UGCCGAcaggggaccuaccuGCUUCGCg -3'
miRNA:   3'- -ACuuCG-------------GCCUACgACGGCU--------------UGAAGCG- -5'
11455 5' -53.6 NC_003085.1 + 11378 0.69 0.55775
Target:  5'- cGgcGCCGGAcaccugcGCUGCCGu-CUcCGCg -3'
miRNA:   3'- aCuuCGGCCUa------CGACGGCuuGAaGCG- -5'
11455 5' -53.6 NC_003085.1 + 12032 0.74 0.332033
Target:  5'- ---uGCCGG-UGCUGCgCGAcuucgugcgccGCUUCGCg -3'
miRNA:   3'- acuuCGGCCuACGACG-GCU-----------UGAAGCG- -5'
11455 5' -53.6 NC_003085.1 + 12389 0.72 0.431676
Target:  5'- gGAagGGCCGGGUGCUGCUGcucGACccgGCg -3'
miRNA:   3'- aCU--UCGGCCUACGACGGC---UUGaagCG- -5'
11455 5' -53.6 NC_003085.1 + 12742 0.66 0.777961
Target:  5'- aGggGCCGGAgguggUGCgUGUCGAGgUg-GCc -3'
miRNA:   3'- aCuuCGGCCU-----ACG-ACGGCUUgAagCG- -5'
11455 5' -53.6 NC_003085.1 + 14022 0.72 0.412281
Target:  5'- -cGAGUCGGuagGaCUGCCGAGCUacugCGCg -3'
miRNA:   3'- acUUCGGCCua-C-GACGGCUUGAa---GCG- -5'
11455 5' -53.6 NC_003085.1 + 14161 0.67 0.680984
Target:  5'- aGccGCCGcGAccUGCUGCCGAGCaaUGUu -3'
miRNA:   3'- aCuuCGGC-CU--ACGACGGCUUGaaGCG- -5'
11455 5' -53.6 NC_003085.1 + 14272 0.68 0.658588
Target:  5'- gUGcGGCCaGGcUGCUGCCGucaAGCgccgCGCa -3'
miRNA:   3'- -ACuUCGG-CCuACGACGGC---UUGaa--GCG- -5'
11455 5' -53.6 NC_003085.1 + 14352 0.66 0.735912
Target:  5'- aGggGCCGGAc-CUGCCacucaacgGggUgacgUCGCa -3'
miRNA:   3'- aCuuCGGCCUacGACGG--------CuuGa---AGCG- -5'
11455 5' -53.6 NC_003085.1 + 14867 0.72 0.393435
Target:  5'- aGAAGCaGGAcgUGCUGCCGGACaccUUCa- -3'
miRNA:   3'- aCUUCGgCCU--ACGACGGCUUG---AAGcg -5'
11455 5' -53.6 NC_003085.1 + 16537 0.69 0.602338
Target:  5'- -uGAGCCGGucgccGUUGCCGca-UUCGCg -3'
miRNA:   3'- acUUCGGCCua---CGACGGCuugAAGCG- -5'
11455 5' -53.6 NC_003085.1 + 19077 0.68 0.669805
Target:  5'- aGgcGCCGGGcccggacggagUGC-GCCGcacccGCUUCGCu -3'
miRNA:   3'- aCuuCGGCCU-----------ACGaCGGCu----UGAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.