Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11455 | 5' | -53.6 | NC_003085.1 | + | 40612 | 0.67 | 0.703185 |
Target: 5'- aGggGCCugugcugacGGccGCUGCCGucCUcgUCGCc -3' miRNA: 3'- aCuuCGG---------CCuaCGACGGCuuGA--AGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 44931 | 0.68 | 0.636089 |
Target: 5'- uUGucGCCGccGAUGCaGCCGGGCUcaaaCGCc -3' miRNA: 3'- -ACuuCGGC--CUACGaCGGCUUGAa---GCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 42068 | 0.68 | 0.647346 |
Target: 5'- cGGAGCgGGGUGaagacgaUGCCGA--UUUGCu -3' miRNA: 3'- aCUUCGgCCUACg------ACGGCUugAAGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 20799 | 0.68 | 0.658588 |
Target: 5'- gUGGAGUgGGAggagGUUGCCGGGgUggaCGCc -3' miRNA: 3'- -ACUUCGgCCUa---CGACGGCUUgAa--GCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 14272 | 0.68 | 0.658588 |
Target: 5'- gUGcGGCCaGGcUGCUGCCGucaAGCgccgCGCa -3' miRNA: 3'- -ACuUCGG-CCuACGACGGC---UUGaa--GCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 21810 | 0.68 | 0.668684 |
Target: 5'- aGGAGuuGGcgcccaagGCcGCCGAGCUcaucaagUCGCg -3' miRNA: 3'- aCUUCggCCua------CGaCGGCUUGA-------AGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 46636 | 0.68 | 0.669805 |
Target: 5'- gGcuGCCGGGcagacguguUGCcagugaUGCCGAggcGCUUCGCc -3' miRNA: 3'- aCuuCGGCCU---------ACG------ACGGCU---UGAAGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 19077 | 0.68 | 0.669805 |
Target: 5'- aGgcGCCGGGcccggacggagUGC-GCCGcacccGCUUCGCu -3' miRNA: 3'- aCuuCGGCCU-----------ACGaCGGCu----UGAAGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 44640 | 0.67 | 0.703185 |
Target: 5'- cGAGGuuGGcucagaGUGUcggUGCCGGGCUUUGg -3' miRNA: 3'- aCUUCggCC------UACG---ACGGCUUGAAGCg -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 28866 | 0.68 | 0.624829 |
Target: 5'- cGAcuuCCGcGgcGCUGCCGAGCagcagUCGCa -3' miRNA: 3'- aCUuc-GGC-CuaCGACGGCUUGa----AGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 20366 | 0.69 | 0.613575 |
Target: 5'- gGAgcGGCCGGAUaugaaugagucGCaGCCcacaGACUUCGCg -3' miRNA: 3'- aCU--UCGGCCUA-----------CGaCGGc---UUGAAGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 2849 | 0.69 | 0.613575 |
Target: 5'- gUGuuGCCGGGaGgaGCCGAugauGCUgaagCGCa -3' miRNA: 3'- -ACuuCGGCCUaCgaCGGCU----UGAa---GCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 12032 | 0.74 | 0.332033 |
Target: 5'- ---uGCCGG-UGCUGCgCGAcuucgugcgccGCUUCGCg -3' miRNA: 3'- acuuCGGCCuACGACG-GCU-----------UGAAGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 44235 | 0.72 | 0.402788 |
Target: 5'- gGAGGCCGcuucCUGCCGGGCcgcgUCGCg -3' miRNA: 3'- aCUUCGGCcuacGACGGCUUGa---AGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 14022 | 0.72 | 0.412281 |
Target: 5'- -cGAGUCGGuagGaCUGCCGAGCUacugCGCg -3' miRNA: 3'- acUUCGGCCua-C-GACGGCUUGAa---GCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 12389 | 0.72 | 0.431676 |
Target: 5'- gGAagGGCCGGGUGCUGCUGcucGACccgGCg -3' miRNA: 3'- aCU--UCGGCCUACGACGGC---UUGaagCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 20752 | 0.72 | 0.441571 |
Target: 5'- aGGA-CCGGcUGCUGCCcGGCUUCGg -3' miRNA: 3'- aCUUcGGCCuACGACGGcUUGAAGCg -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 11127 | 0.71 | 0.457666 |
Target: 5'- uUGggGCgcgcgucgucucuCGGAUG-UGCCGAcaggggaccuaccuGCUUCGCg -3' miRNA: 3'- -ACuuCG-------------GCCUACgACGGCU--------------UGAAGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 47966 | 0.69 | 0.591127 |
Target: 5'- cGAGcGCCGGAcggGCcgcGUCGAGCaagUCGCg -3' miRNA: 3'- aCUU-CGGCCUa--CGa--CGGCUUGa--AGCG- -5' |
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11455 | 5' | -53.6 | NC_003085.1 | + | 2371 | 0.69 | 0.602338 |
Target: 5'- cGAGGCCGcg-GC-GCgCGAGCUcUCGCa -3' miRNA: 3'- aCUUCGGCcuaCGaCG-GCUUGA-AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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