miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11456 3' -55.8 NC_003085.1 + 282 0.66 0.636567
Target:  5'- --aGGAGCagcGGCGGcagGaCCGGGCGGCc -3'
miRNA:   3'- guaCUUCGa--CCGCUa--C-GGCCUGUCGu -5'
11456 3' -55.8 NC_003085.1 + 26107 0.66 0.636567
Target:  5'- -cUGggGCUGcGCcucgGcgGCCGG-CGGCGc -3'
miRNA:   3'- guACuuCGAC-CG----CuaCGGCCuGUCGU- -5'
11456 3' -55.8 NC_003085.1 + 3551 0.66 0.636567
Target:  5'- -uUGGAccacGCUcaaGGCG--GCCGGGCGGCAa -3'
miRNA:   3'- guACUU----CGA---CCGCuaCGGCCUGUCGU- -5'
11456 3' -55.8 NC_003085.1 + 41022 0.66 0.625354
Target:  5'- cCGUGGGcgucGCUGGCGuccucCUGGGCGGCu -3'
miRNA:   3'- -GUACUU----CGACCGCuac--GGCCUGUCGu -5'
11456 3' -55.8 NC_003085.1 + 45950 0.66 0.625354
Target:  5'- aAUGAcGCUcGCGAgacGCCaGACGGCGa -3'
miRNA:   3'- gUACUuCGAcCGCUa--CGGcCUGUCGU- -5'
11456 3' -55.8 NC_003085.1 + 19207 0.66 0.625354
Target:  5'- -cUGggGC-GGCGGggGCUGGGCGccgcGCAa -3'
miRNA:   3'- guACuuCGaCCGCUa-CGGCCUGU----CGU- -5'
11456 3' -55.8 NC_003085.1 + 9268 0.66 0.614149
Target:  5'- gGUGAGGUUGGCGggGaugaGGGgGGUAa -3'
miRNA:   3'- gUACUUCGACCGCuaCgg--CCUgUCGU- -5'
11456 3' -55.8 NC_003085.1 + 35338 0.66 0.614149
Target:  5'- --cGGgcAGCacGGUGAUGCCGuGGCAGUg -3'
miRNA:   3'- guaCU--UCGa-CCGCUACGGC-CUGUCGu -5'
11456 3' -55.8 NC_003085.1 + 4424 0.66 0.614149
Target:  5'- --gGAGGCUGGCGA--CUGGcAgAGCAu -3'
miRNA:   3'- guaCUUCGACCGCUacGGCC-UgUCGU- -5'
11456 3' -55.8 NC_003085.1 + 38697 0.66 0.614149
Target:  5'- gCAUGcccccAGCgucuucccGGCGcccgugugGCCGGACAGCAa -3'
miRNA:   3'- -GUACu----UCGa-------CCGCua------CGGCCUGUCGU- -5'
11456 3' -55.8 NC_003085.1 + 20090 0.66 0.602959
Target:  5'- -----cGCcaUGGCGuucUGCCGGGCGGCc -3'
miRNA:   3'- guacuuCG--ACCGCu--ACGGCCUGUCGu -5'
11456 3' -55.8 NC_003085.1 + 4090 0.66 0.602959
Target:  5'- --aGAAGUucugGGUGG-GCCGGGCGGUc -3'
miRNA:   3'- guaCUUCGa---CCGCUaCGGCCUGUCGu -5'
11456 3' -55.8 NC_003085.1 + 4023 0.66 0.602959
Target:  5'- ---aGAGUUGGUGGUGCCGuGACGacGCc -3'
miRNA:   3'- guacUUCGACCGCUACGGC-CUGU--CGu -5'
11456 3' -55.8 NC_003085.1 + 37865 0.66 0.596257
Target:  5'- -----cGCUGGCcggccagacgucggaGGUGCUGGugGGCAc -3'
miRNA:   3'- guacuuCGACCG---------------CUACGGCCugUCGU- -5'
11456 3' -55.8 NC_003085.1 + 38194 0.67 0.580667
Target:  5'- ---uGGGCUGGCGGcaacUCGGGCGGCGg -3'
miRNA:   3'- guacUUCGACCGCUac--GGCCUGUCGU- -5'
11456 3' -55.8 NC_003085.1 + 22950 0.67 0.569583
Target:  5'- --cGgcGC-GGCGAaGCCGGACgAGCc -3'
miRNA:   3'- guaCuuCGaCCGCUaCGGCCUG-UCGu -5'
11456 3' -55.8 NC_003085.1 + 24677 0.67 0.565164
Target:  5'- -cUGAAGUUccucuccacggacGUGGUGCUGGACGGCGg -3'
miRNA:   3'- guACUUCGAc------------CGCUACGGCCUGUCGU- -5'
11456 3' -55.8 NC_003085.1 + 11369 0.67 0.558552
Target:  5'- --cGAuGgUGGCGgcGCCGGACAccuGCGc -3'
miRNA:   3'- guaCUuCgACCGCuaCGGCCUGU---CGU- -5'
11456 3' -55.8 NC_003085.1 + 12016 0.67 0.547582
Target:  5'- -cUGAcGCUGGCGcaccUGCCGGuGCuGCGc -3'
miRNA:   3'- guACUuCGACCGCu---ACGGCC-UGuCGU- -5'
11456 3' -55.8 NC_003085.1 + 28038 0.67 0.547582
Target:  5'- gAUGAGGUcguucuGCGcgGCCucGGACAGCAg -3'
miRNA:   3'- gUACUUCGac----CGCuaCGG--CCUGUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.