Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11457 | 5' | -61.4 | NC_003085.1 | + | 18715 | 0.68 | 0.283726 |
Target: 5'- cCGCCugaCGAGACGGGaCGCGcCUUCCUGc -3' miRNA: 3'- -GUGG---GCUCUGCUCgGCGCcGAAGGGC- -5' |
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11457 | 5' | -61.4 | NC_003085.1 | + | 4718 | 0.7 | 0.232875 |
Target: 5'- --aCCGAaGCGAGCgCGgaacuCGGCUUCCCGu -3' miRNA: 3'- gugGGCUcUGCUCG-GC-----GCCGAAGGGC- -5' |
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11457 | 5' | -61.4 | NC_003085.1 | + | 29153 | 0.7 | 0.221422 |
Target: 5'- cUACUCGcAGGCGAcGUCGCGGUUggaCCCGc -3' miRNA: 3'- -GUGGGC-UCUGCU-CGGCGCCGAa--GGGC- -5' |
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11457 | 5' | -61.4 | NC_003085.1 | + | 9899 | 0.7 | 0.205146 |
Target: 5'- gGCgCCGuAGuACGcAGCUGCGGCagUCCCGa -3' miRNA: 3'- gUG-GGC-UC-UGC-UCGGCGCCGa-AGGGC- -5' |
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11457 | 5' | -61.4 | NC_003085.1 | + | 32842 | 0.72 | 0.166737 |
Target: 5'- gGCCCGAGaggccGCGcGCCGCGGgaccgCCCGg -3' miRNA: 3'- gUGGGCUC-----UGCuCGGCGCCgaa--GGGC- -5' |
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11457 | 5' | -61.4 | NC_003085.1 | + | 24051 | 0.74 | 0.108749 |
Target: 5'- uCGCCCGccuGGCGAagcgcgggaaGCCGCGGCUcgUCUCGg -3' miRNA: 3'- -GUGGGCu--CUGCU----------CGGCGCCGA--AGGGC- -5' |
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11457 | 5' | -61.4 | NC_003085.1 | + | 25390 | 1.07 | 0.000355 |
Target: 5'- cCACCCGAGACGAGCCGCGGCUUCCCGc -3' miRNA: 3'- -GUGGGCUCUGCUCGGCGCCGAAGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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