miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11459 5' -61.1 NC_003085.1 + 24916 1.09 0.000248
Target:  5'- aGGCAUGUCCGCGCCGCGCACGCACCGc -3'
miRNA:   3'- -CCGUACAGGCGCGGCGCGUGCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 2516 0.79 0.047444
Target:  5'- cGGUGUGcCCGCGUCGgccccUGCGCGCGCCGa -3'
miRNA:   3'- -CCGUACaGGCGCGGC-----GCGUGCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 709 0.77 0.066398
Target:  5'- gGGCAacUCCGCGUgGCGCcugACGCGCCGc -3'
miRNA:   3'- -CCGUacAGGCGCGgCGCG---UGCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 765 0.77 0.070199
Target:  5'- gGGCGaGUCCGCcacGCCGCGCAacggUGCGCCc -3'
miRNA:   3'- -CCGUaCAGGCG---CGGCGCGU----GCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 41817 0.76 0.085215
Target:  5'- cGCAUGUCgGCGCCGCcCAaGCGCCc -3'
miRNA:   3'- cCGUACAGgCGCGGCGcGUgCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 10783 0.74 0.108749
Target:  5'- gGGCAUGccaccucuUCCGCGCaGCGgugcgaguggaaaCGCGCACCGg -3'
miRNA:   3'- -CCGUAC--------AGGCGCGgCGC-------------GUGCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 8674 0.74 0.11205
Target:  5'- aGCccGUCCGCGCgcgacgCGUGCGCGCACUu -3'
miRNA:   3'- cCGuaCAGGCGCG------GCGCGUGCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 7333 0.73 0.131762
Target:  5'- aGCA--UCCGCGCCGUGCAuuCGCuuGCCGu -3'
miRNA:   3'- cCGUacAGGCGCGGCGCGU--GCG--UGGC- -5'
11459 5' -61.1 NC_003085.1 + 39591 0.73 0.139015
Target:  5'- uGGCAagcugGagCGCGUCGCGgaGCGCACCGa -3'
miRNA:   3'- -CCGUa----CagGCGCGGCGCg-UGCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 29187 0.73 0.139015
Target:  5'- uGGCAgcgCCGCGaggacgcggaGCGCACGCGCCu -3'
miRNA:   3'- -CCGUacaGGCGCgg--------CGCGUGCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 28447 0.72 0.150583
Target:  5'- cGGCugccGUCCGCGUCGaaGCGCGCGuuGa -3'
miRNA:   3'- -CCGua--CAGGCGCGGCg-CGUGCGUggC- -5'
11459 5' -61.1 NC_003085.1 + 48896 0.72 0.158775
Target:  5'- aGCAuUGcCCGCcaGCCGCGCcgccuCGCGCCGu -3'
miRNA:   3'- cCGU-ACaGGCG--CGGCGCGu----GCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 20876 0.72 0.167366
Target:  5'- cGGCGUGUCCacCGCCauguGCGCcUGCACUGc -3'
miRNA:   3'- -CCGUACAGGc-GCGG----CGCGuGCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 28832 0.71 0.185807
Target:  5'- cGuCAUcGUCCGCGuCCGCGaa-GCGCCGg -3'
miRNA:   3'- cC-GUA-CAGGCGC-GGCGCgugCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 22744 0.71 0.190689
Target:  5'- cGGCg---CCGCGCCGUcaccgcccuGCGCGCGCuCGa -3'
miRNA:   3'- -CCGuacaGGCGCGGCG---------CGUGCGUG-GC- -5'
11459 5' -61.1 NC_003085.1 + 29069 0.71 0.195683
Target:  5'- gGGCGUGUCCGCGaaGUcuGUggGCugCGa -3'
miRNA:   3'- -CCGUACAGGCGCggCG--CGugCGugGC- -5'
11459 5' -61.1 NC_003085.1 + 24105 0.71 0.195683
Target:  5'- cGGCGUGcCCGUcaCCGUccggaaGCGCGCGCCa -3'
miRNA:   3'- -CCGUACaGGCGc-GGCG------CGUGCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 13914 0.71 0.200276
Target:  5'- cGGCGUG-CgCGCGUUucggacgGgGCGCGCGCCGa -3'
miRNA:   3'- -CCGUACaG-GCGCGG-------CgCGUGCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 23237 0.71 0.200792
Target:  5'- cGGCcg--CCGCGCUuCGCAcCGCGCCGc -3'
miRNA:   3'- -CCGuacaGGCGCGGcGCGU-GCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 29746 0.71 0.206016
Target:  5'- aGGaCGUGgCCGcCGUCGCGCcccaccucguGCGCACUGg -3'
miRNA:   3'- -CC-GUACaGGC-GCGGCGCG----------UGCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.