miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11459 5' -61.1 NC_003085.1 + 43915 0.69 0.271535
Target:  5'- aGCAUGUCCGCcaaccggaugGCCGCcGC-CGUugUGu -3'
miRNA:   3'- cCGUACAGGCG----------CGGCG-CGuGCGugGC- -5'
11459 5' -61.1 NC_003085.1 + 12946 0.7 0.2281
Target:  5'- aGGaccGUCCGCGCCGCGUccggaAgGC-CCGg -3'
miRNA:   3'- -CCguaCAGGCGCGGCGCG-----UgCGuGGC- -5'
11459 5' -61.1 NC_003085.1 + 43283 0.7 0.2281
Target:  5'- aGUGUGUCCGUGCUGgGCAUggaGCACa- -3'
miRNA:   3'- cCGUACAGGCGCGGCgCGUG---CGUGgc -5'
11459 5' -61.1 NC_003085.1 + 38821 0.7 0.230415
Target:  5'- aGGCGUGUgagcagggcgcacugCCGCGUCGUcccacugcgacgGCGCGCGgCGa -3'
miRNA:   3'- -CCGUACA---------------GGCGCGGCG------------CGUGCGUgGC- -5'
11459 5' -61.1 NC_003085.1 + 43447 0.7 0.239875
Target:  5'- aGGgGUG-CCGCGCUGCugagcgaugacGuCACGCACCc -3'
miRNA:   3'- -CCgUACaGGCGCGGCG-----------C-GUGCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 44192 0.7 0.239875
Target:  5'- gGGC--GUCC-CGUCGCGCACcCACCa -3'
miRNA:   3'- -CCGuaCAGGcGCGGCGCGUGcGUGGc -5'
11459 5' -61.1 NC_003085.1 + 38085 0.69 0.245337
Target:  5'- cGGCAgcgcaggUGUCCgGCGCCGC-CAC-CAUCGu -3'
miRNA:   3'- -CCGU-------ACAGG-CGCGGCGcGUGcGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 16466 0.69 0.245951
Target:  5'- cGGCAgUGUCCGaC-CUGCGCGC-CGCCu -3'
miRNA:   3'- -CCGU-ACAGGC-GcGGCGCGUGcGUGGc -5'
11459 5' -61.1 NC_003085.1 + 1531 0.69 0.252153
Target:  5'- aGGCGUgacuccagcGUCUGCugucgcgagGCCGUGCGCGuCGCCu -3'
miRNA:   3'- -CCGUA---------CAGGCG---------CGGCGCGUGC-GUGGc -5'
11459 5' -61.1 NC_003085.1 + 28486 0.7 0.211357
Target:  5'- uGCGUGcugaCGCGCaaCGCGCGCGCCa -3'
miRNA:   3'- cCGUACag--GCGCGgcGCGUGCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 20436 0.71 0.206016
Target:  5'- uGGCAggaggagaUGUCC--GCCGCGCGCGaGCCGc -3'
miRNA:   3'- -CCGU--------ACAGGcgCGGCGCGUGCgUGGC- -5'
11459 5' -61.1 NC_003085.1 + 44392 0.71 0.206016
Target:  5'- gGGC-UGUUCGUcaucCCGCGC-CGCACCa -3'
miRNA:   3'- -CCGuACAGGCGc---GGCGCGuGCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 10783 0.74 0.108749
Target:  5'- gGGCAUGccaccucuUCCGCGCaGCGgugcgaguggaaaCGCGCACCGg -3'
miRNA:   3'- -CCGUAC--------AGGCGCGgCGC-------------GUGCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 8674 0.74 0.11205
Target:  5'- aGCccGUCCGCGCgcgacgCGUGCGCGCACUu -3'
miRNA:   3'- cCGuaCAGGCGCG------GCGCGUGCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 29187 0.73 0.139015
Target:  5'- uGGCAgcgCCGCGaggacgcggaGCGCACGCGCCu -3'
miRNA:   3'- -CCGUacaGGCGCgg--------CGCGUGCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 39591 0.73 0.139015
Target:  5'- uGGCAagcugGagCGCGUCGCGgaGCGCACCGa -3'
miRNA:   3'- -CCGUa----CagGCGCGGCGCg-UGCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 48896 0.72 0.158775
Target:  5'- aGCAuUGcCCGCcaGCCGCGCcgccuCGCGCCGu -3'
miRNA:   3'- cCGU-ACaGGCG--CGGCGCGu----GCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 13914 0.71 0.200276
Target:  5'- cGGCGUG-CgCGCGUUucggacgGgGCGCGCGCCGa -3'
miRNA:   3'- -CCGUACaG-GCGCGG-------CgCGUGCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 23237 0.71 0.200792
Target:  5'- cGGCcg--CCGCGCUuCGCAcCGCGCCGc -3'
miRNA:   3'- -CCGuacaGGCGCGGcGCGU-GCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 29746 0.71 0.206016
Target:  5'- aGGaCGUGgCCGcCGUCGCGCcccaccucguGCGCACUGg -3'
miRNA:   3'- -CC-GUACaGGC-GCGGCGCG----------UGCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.