miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11459 5' -61.1 NC_003085.1 + 709 0.77 0.066398
Target:  5'- gGGCAacUCCGCGUgGCGCcugACGCGCCGc -3'
miRNA:   3'- -CCGUacAGGCGCGgCGCG---UGCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 765 0.77 0.070199
Target:  5'- gGGCGaGUCCGCcacGCCGCGCAacggUGCGCCc -3'
miRNA:   3'- -CCGUaCAGGCG---CGGCGCGU----GCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 848 0.66 0.421894
Target:  5'- aGGCAUa-CgGCGCCaaGCGCAucgcuCGCGCCu -3'
miRNA:   3'- -CCGUAcaGgCGCGG--CGCGU-----GCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 1310 0.67 0.344739
Target:  5'- cGCGUGgCCGCGaaG-GCugGCACUGc -3'
miRNA:   3'- cCGUACaGGCGCggCgCGugCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 1503 0.66 0.403862
Target:  5'- cGGCccGUCCgGCGCuCGgGCAagagGCAgCCGa -3'
miRNA:   3'- -CCGuaCAGG-CGCG-GCgCGUg---CGU-GGC- -5'
11459 5' -61.1 NC_003085.1 + 1531 0.69 0.252153
Target:  5'- aGGCGUgacuccagcGUCUGCugucgcgagGCCGUGCGCGuCGCCu -3'
miRNA:   3'- -CCGUA---------CAGGCG---------CGGCGCGUGC-GUGGc -5'
11459 5' -61.1 NC_003085.1 + 1576 0.67 0.352794
Target:  5'- uGCAguugCgGCGCgGCGUACGCguGCCGu -3'
miRNA:   3'- cCGUaca-GgCGCGgCGCGUGCG--UGGC- -5'
11459 5' -61.1 NC_003085.1 + 2516 0.79 0.047444
Target:  5'- cGGUGUGcCCGCGUCGgccccUGCGCGCGCCGa -3'
miRNA:   3'- -CCGUACaGGCGCGGC-----GCGUGCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 4349 0.69 0.258484
Target:  5'- cGGCaAUGcCUaCGCCGCGCGCG-ACCu -3'
miRNA:   3'- -CCG-UACaGGcGCGGCGCGUGCgUGGc -5'
11459 5' -61.1 NC_003085.1 + 5248 0.67 0.352794
Target:  5'- uGGUG-GUUCGaCGCUGCGgGCGCGCgGc -3'
miRNA:   3'- -CCGUaCAGGC-GCGGCGCgUGCGUGgC- -5'
11459 5' -61.1 NC_003085.1 + 5496 0.67 0.344739
Target:  5'- cGGCGUGgggCCGgGCCGUGagggaGCACg- -3'
miRNA:   3'- -CCGUACa--GGCgCGGCGCgug--CGUGgc -5'
11459 5' -61.1 NC_003085.1 + 6710 0.67 0.344739
Target:  5'- cGGCgAUGgaugCCGUccaCCGCGCcCGCAUCGc -3'
miRNA:   3'- -CCG-UACa---GGCGc--GGCGCGuGCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 6849 0.68 0.299215
Target:  5'- -cCAUGUCgCGaaaGCCGCGCA-GCACUa -3'
miRNA:   3'- ccGUACAG-GCg--CGGCGCGUgCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 7333 0.73 0.131762
Target:  5'- aGCA--UCCGCGCCGUGCAuuCGCuuGCCGu -3'
miRNA:   3'- cCGUacAGGCGCGGCGCGU--GCG--UGGC- -5'
11459 5' -61.1 NC_003085.1 + 7445 0.67 0.336817
Target:  5'- aGGCGcccucGUCCGUGCCGa-CGC-CGCCGg -3'
miRNA:   3'- -CCGUa----CAGGCGCGGCgcGUGcGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 8674 0.74 0.11205
Target:  5'- aGCccGUCCGCGCgcgacgCGUGCGCGCACUu -3'
miRNA:   3'- cCGuaCAGGCGCG------GCGCGUGCGUGGc -5'
11459 5' -61.1 NC_003085.1 + 9094 0.67 0.344739
Target:  5'- aGGC--GUCaGCGCCGCGgGCaGCAgCGg -3'
miRNA:   3'- -CCGuaCAGgCGCGGCGCgUG-CGUgGC- -5'
11459 5' -61.1 NC_003085.1 + 10479 0.69 0.278256
Target:  5'- cGGC-UGgCCGaccuGCUGCGCGgCGCACUGg -3'
miRNA:   3'- -CCGuACaGGCg---CGGCGCGU-GCGUGGC- -5'
11459 5' -61.1 NC_003085.1 + 10710 0.67 0.336817
Target:  5'- gGGCAcuccgUGUCCGUggugccuacaGCCGCGCugACGacguucugcCACCGg -3'
miRNA:   3'- -CCGU-----ACAGGCG----------CGGCGCG--UGC---------GUGGC- -5'
11459 5' -61.1 NC_003085.1 + 10783 0.74 0.108749
Target:  5'- gGGCAUGccaccucuUCCGCGCaGCGgugcgaguggaaaCGCGCACCGg -3'
miRNA:   3'- -CCGUAC--------AGGCGCGgCGC-------------GUGCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.