Results 21 - 40 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11461 | 3' | -62.4 | NC_003085.1 | + | 44932 | 0.73 | 0.124866 |
Target: 5'- uGUCGCCGCCgaugcaGCCGGGCUcaaACGccucguuggcccaGUCGCCa -3' miRNA: 3'- -CGGUGGCGG------UGGUCCGG---UGC-------------CAGCGG- -5' |
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11461 | 3' | -62.4 | NC_003085.1 | + | 17402 | 0.73 | 0.1252 |
Target: 5'- aGCgUACCGCCgggACCAGGCCA-GGaugUGCCg -3' miRNA: 3'- -CG-GUGGCGG---UGGUCCGGUgCCa--GCGG- -5' |
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11461 | 3' | -62.4 | NC_003085.1 | + | 3845 | 0.73 | 0.1252 |
Target: 5'- -gCACUGCCcauCCAGGaCCACGGcgCGUCg -3' miRNA: 3'- cgGUGGCGGu--GGUCC-GGUGCCa-GCGG- -5' |
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11461 | 3' | -62.4 | NC_003085.1 | + | 8637 | 0.73 | 0.1252 |
Target: 5'- gGCCGCCGUCAgguaCAGGCCGgcCGGgacgCGCg -3' miRNA: 3'- -CGGUGGCGGUg---GUCCGGU--GCCa---GCGg -5' |
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11461 | 3' | -62.4 | NC_003085.1 | + | 25124 | 0.72 | 0.128242 |
Target: 5'- cGUCGCCGUagagCGCCGcggagaugucguuGGCCAUGGUgGCCu -3' miRNA: 3'- -CGGUGGCG----GUGGU-------------CCGGUGCCAgCGG- -5' |
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11461 | 3' | -62.4 | NC_003085.1 | + | 11398 | 0.72 | 0.128584 |
Target: 5'- cGCUACCGCCGgCugacgcaccGCCGCGGUgGCUg -3' miRNA: 3'- -CGGUGGCGGUgGuc-------CGGUGCCAgCGG- -5' |
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11461 | 3' | -62.4 | NC_003085.1 | + | 21964 | 0.72 | 0.137054 |
Target: 5'- cGCCGCCGUCGuacguccaguuccaCAGGCCGacgaGGUgGCCu -3' miRNA: 3'- -CGGUGGCGGUg-------------GUCCGGUg---CCAgCGG- -5' |
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11461 | 3' | -62.4 | NC_003085.1 | + | 46631 | 0.72 | 0.139251 |
Target: 5'- cGCC-CgGCUGCCGGGCagACGuGUUGCCa -3' miRNA: 3'- -CGGuGgCGGUGGUCCGg-UGC-CAGCGG- -5' |
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11461 | 3' | -62.4 | NC_003085.1 | + | 2097 | 0.72 | 0.139251 |
Target: 5'- aGCCGCCGCaCcUCGGcGCCAuCGG-CGCCc -3' miRNA: 3'- -CGGUGGCG-GuGGUC-CGGU-GCCaGCGG- -5' |
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11461 | 3' | -62.4 | NC_003085.1 | + | 34772 | 0.72 | 0.142983 |
Target: 5'- gGCCuUgGCCuucguCCAGcGCCACGG-CGCCu -3' miRNA: 3'- -CGGuGgCGGu----GGUC-CGGUGCCaGCGG- -5' |
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11461 | 3' | -62.4 | NC_003085.1 | + | 17198 | 0.71 | 0.154734 |
Target: 5'- aGUC-CCggGCCACCgAGGCCugGG-CGCUg -3' miRNA: 3'- -CGGuGG--CGGUGG-UCCGGugCCaGCGG- -5' |
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11461 | 3' | -62.4 | NC_003085.1 | + | 18941 | 0.71 | 0.154734 |
Target: 5'- cGCCAUCGCCuACaGGGCCccgcgACGGUgGCg -3' miRNA: 3'- -CGGUGGCGG-UGgUCCGG-----UGCCAgCGg -5' |
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11461 | 3' | -62.4 | NC_003085.1 | + | 43499 | 0.71 | 0.157599 |
Target: 5'- cCCACCGCCuCCAGcaGCCcggcguggacgggaACGG-CGCCg -3' miRNA: 3'- cGGUGGCGGuGGUC--CGG--------------UGCCaGCGG- -5' |
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11461 | 3' | -62.4 | NC_003085.1 | + | 12609 | 0.71 | 0.158842 |
Target: 5'- aCCACCggguuGCCGCCAGGCaGCGuGUaggUGCCa -3' miRNA: 3'- cGGUGG-----CGGUGGUCCGgUGC-CA---GCGG- -5' |
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11461 | 3' | -62.4 | NC_003085.1 | + | 48394 | 0.71 | 0.160512 |
Target: 5'- aGCCACCgucccauucagcggaGCCACgCGGGCaguuCGG-CGCCu -3' miRNA: 3'- -CGGUGG---------------CGGUG-GUCCGgu--GCCaGCGG- -5' |
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11461 | 3' | -62.4 | NC_003085.1 | + | 12314 | 0.71 | 0.163048 |
Target: 5'- cGUCACCGCCA--GGGugcCCGCcGUCGCCg -3' miRNA: 3'- -CGGUGGCGGUggUCC---GGUGcCAGCGG- -5' |
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11461 | 3' | -62.4 | NC_003085.1 | + | 41550 | 0.71 | 0.163048 |
Target: 5'- uCUGCUGCCGCCGcGGCgGCaGUCGCg -3' miRNA: 3'- cGGUGGCGGUGGU-CCGgUGcCAGCGg -5' |
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11461 | 3' | -62.4 | NC_003085.1 | + | 27982 | 0.71 | 0.167354 |
Target: 5'- uCCACCacGCCGCgCAGGCCGCccuuGUCGgCg -3' miRNA: 3'- cGGUGG--CGGUG-GUCCGGUGc---CAGCgG- -5' |
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11461 | 3' | -62.4 | NC_003085.1 | + | 25069 | 0.71 | 0.167354 |
Target: 5'- uCCACCGgCAcggccccguCCAGGCCAuugauggccCGGcCGCCa -3' miRNA: 3'- cGGUGGCgGU---------GGUCCGGU---------GCCaGCGG- -5' |
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11461 | 3' | -62.4 | NC_003085.1 | + | 30316 | 0.71 | 0.167354 |
Target: 5'- cCCAUgGCCACCcagcGGGCCcugGCGGaCGCUg -3' miRNA: 3'- cGGUGgCGGUGG----UCCGG---UGCCaGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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