miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11461 3' -62.4 NC_003085.1 + 24294 1.13 0.000097
Target:  5'- cGCCACCGCCACCAGGCCACGGUCGCCg -3'
miRNA:   3'- -CGGUGGCGGUGGUCCGGUGCCAGCGG- -5'
11461 3' -62.4 NC_003085.1 + 29772 0.85 0.013905
Target:  5'- uGCCGCCGCgCGCCuccaGGGCCGCcaggaGGUCGCCg -3'
miRNA:   3'- -CGGUGGCG-GUGG----UCCGGUG-----CCAGCGG- -5'
11461 3' -62.4 NC_003085.1 + 14750 0.79 0.039494
Target:  5'- uGCCACgCGCCGCCGuGGCCAugcaacCGG-CGCCu -3'
miRNA:   3'- -CGGUG-GCGGUGGU-CCGGU------GCCaGCGG- -5'
11461 3' -62.4 NC_003085.1 + 20319 0.79 0.044044
Target:  5'- cGCCACCuUCACCcuggaugaacucuGGGCCACGG-CGCCu -3'
miRNA:   3'- -CGGUGGcGGUGG-------------UCCGGUGCCaGCGG- -5'
11461 3' -62.4 NC_003085.1 + 21236 0.79 0.045418
Target:  5'- cGCUGCCGCCACCcauGGCCGacacUGG-CGCCa -3'
miRNA:   3'- -CGGUGGCGGUGGu--CCGGU----GCCaGCGG- -5'
11461 3' -62.4 NC_003085.1 + 12558 0.77 0.05519
Target:  5'- cGCCGCCGCUgGCCGGGCUgggACGGUgGaCCg -3'
miRNA:   3'- -CGGUGGCGG-UGGUCCGG---UGCCAgC-GG- -5'
11461 3' -62.4 NC_003085.1 + 16504 0.77 0.063389
Target:  5'- uGCCAUCGCCGCaagcauggCAGGCgCGCcuguugagccGGUCGCCg -3'
miRNA:   3'- -CGGUGGCGGUG--------GUCCG-GUG----------CCAGCGG- -5'
11461 3' -62.4 NC_003085.1 + 788 0.76 0.064628
Target:  5'- uGCUGCUgugGCC-CCAGGCCACGGUggacguccgcgugcCGCCg -3'
miRNA:   3'- -CGGUGG---CGGuGGUCCGGUGCCA--------------GCGG- -5'
11461 3' -62.4 NC_003085.1 + 1489 0.76 0.068862
Target:  5'- cGUCACCGUCGCCAgccucGGCCggugcgccucACGGcCGCCa -3'
miRNA:   3'- -CGGUGGCGGUGGU-----CCGG----------UGCCaGCGG- -5'
11461 3' -62.4 NC_003085.1 + 21920 0.76 0.07276
Target:  5'- cGUCACCGCCGCCGgagauGGCCACGaGggaGUCa -3'
miRNA:   3'- -CGGUGGCGGUGGU-----CCGGUGC-Cag-CGG- -5'
11461 3' -62.4 NC_003085.1 + 29596 0.75 0.082771
Target:  5'- cGCCcaGCCGuCCAgCAGGCCgaaguagugcgacaGCGGuUCGCCg -3'
miRNA:   3'- -CGG--UGGC-GGUgGUCCGG--------------UGCC-AGCGG- -5'
11461 3' -62.4 NC_003085.1 + 8899 0.75 0.090572
Target:  5'- uGCgCACCGCCACCaAGGCCuug--CGCCu -3'
miRNA:   3'- -CG-GUGGCGGUGG-UCCGGugccaGCGG- -5'
11461 3' -62.4 NC_003085.1 + 1055 0.74 0.09307
Target:  5'- aGCCAgCGCCGCCgAGGCagacaauGCGGcgcugcUCGCCg -3'
miRNA:   3'- -CGGUgGCGGUGG-UCCGg------UGCC------AGCGG- -5'
11461 3' -62.4 NC_003085.1 + 21159 0.74 0.095375
Target:  5'- cCCACCGCgCACCugcugcgAGGCCugGuacUCGCCg -3'
miRNA:   3'- cGGUGGCG-GUGG-------UCCGGugCc--AGCGG- -5'
11461 3' -62.4 NC_003085.1 + 44238 0.74 0.100964
Target:  5'- gGCCGCUuCCuGCCGGGCCGC-GUCGCg -3'
miRNA:   3'- -CGGUGGcGG-UGGUCCGGUGcCAGCGg -5'
11461 3' -62.4 NC_003085.1 + 34545 0.73 0.112473
Target:  5'- gGCCGCgagCGCCACCAgccGGCC-CGcGUgCGCCg -3'
miRNA:   3'- -CGGUG---GCGGUGGU---CCGGuGC-CA-GCGG- -5'
11461 3' -62.4 NC_003085.1 + 46692 0.73 0.114302
Target:  5'- cGCCGCCGCUGCCugcuuccGGCCAgCGGaguccuugggcagCGCCu -3'
miRNA:   3'- -CGGUGGCGGUGGu------CCGGU-GCCa------------GCGG- -5'
11461 3' -62.4 NC_003085.1 + 1547 0.73 0.118678
Target:  5'- uCUGCUGUCGCgAGGCCguGCGcGUCGCCu -3'
miRNA:   3'- cGGUGGCGGUGgUCCGG--UGC-CAGCGG- -5'
11461 3' -62.4 NC_003085.1 + 11262 0.73 0.118678
Target:  5'- aGCCACCGCCgcccgaguugccGCCAGcCCAgGGgaacaccugCGCCg -3'
miRNA:   3'- -CGGUGGCGG------------UGGUCcGGUgCCa--------GCGG- -5'
11461 3' -62.4 NC_003085.1 + 24984 0.73 0.121898
Target:  5'- gGCCACCGCCGCCAuGUCcuccaccuGCGaG-CGCCa -3'
miRNA:   3'- -CGGUGGCGGUGGUcCGG--------UGC-CaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.