miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11461 3' -62.4 NC_003085.1 + 2318 0.7 0.180888
Target:  5'- uGCC-UCGCCACC-GGCCGCcgcuucaucGGUUGCg -3'
miRNA:   3'- -CGGuGGCGGUGGuCCGGUG---------CCAGCGg -5'
11461 3' -62.4 NC_003085.1 + 11398 0.72 0.128584
Target:  5'- cGCUACCGCCGgCugacgcaccGCCGCGGUgGCUg -3'
miRNA:   3'- -CGGUGGCGGUgGuc-------CGGUGCCAgCGG- -5'
11461 3' -62.4 NC_003085.1 + 46631 0.72 0.139251
Target:  5'- cGCC-CgGCUGCCGGGCagACGuGUUGCCa -3'
miRNA:   3'- -CGGuGgCGGUGGUCCGg-UGC-CAGCGG- -5'
11461 3' -62.4 NC_003085.1 + 2097 0.72 0.139251
Target:  5'- aGCCGCCGCaCcUCGGcGCCAuCGG-CGCCc -3'
miRNA:   3'- -CGGUGGCG-GuGGUC-CGGU-GCCaGCGG- -5'
11461 3' -62.4 NC_003085.1 + 17198 0.71 0.154734
Target:  5'- aGUC-CCggGCCACCgAGGCCugGG-CGCUg -3'
miRNA:   3'- -CGGuGG--CGGUGG-UCCGGugCCaGCGG- -5'
11461 3' -62.4 NC_003085.1 + 18941 0.71 0.154734
Target:  5'- cGCCAUCGCCuACaGGGCCccgcgACGGUgGCg -3'
miRNA:   3'- -CGGUGGCGG-UGgUCCGG-----UGCCAgCGg -5'
11461 3' -62.4 NC_003085.1 + 43499 0.71 0.157599
Target:  5'- cCCACCGCCuCCAGcaGCCcggcguggacgggaACGG-CGCCg -3'
miRNA:   3'- cGGUGGCGGuGGUC--CGG--------------UGCCaGCGG- -5'
11461 3' -62.4 NC_003085.1 + 41550 0.71 0.163048
Target:  5'- uCUGCUGCCGCCGcGGCgGCaGUCGCg -3'
miRNA:   3'- cGGUGGCGGUGGU-CCGgUGcCAGCGg -5'
11461 3' -62.4 NC_003085.1 + 30316 0.71 0.167354
Target:  5'- cCCAUgGCCACCcagcGGGCCcugGCGGaCGCUg -3'
miRNA:   3'- cGGUGgCGGUGG----UCCGG---UGCCaGCGG- -5'
11461 3' -62.4 NC_003085.1 + 17402 0.73 0.1252
Target:  5'- aGCgUACCGCCgggACCAGGCCA-GGaugUGCCg -3'
miRNA:   3'- -CG-GUGGCGG---UGGUCCGGUgCCa--GCGG- -5'
11461 3' -62.4 NC_003085.1 + 3845 0.73 0.1252
Target:  5'- -gCACUGCCcauCCAGGaCCACGGcgCGUCg -3'
miRNA:   3'- cgGUGGCGGu--GGUCC-GGUGCCa-GCGG- -5'
11461 3' -62.4 NC_003085.1 + 44932 0.73 0.124866
Target:  5'- uGUCGCCGCCgaugcaGCCGGGCUcaaACGccucguuggcccaGUCGCCa -3'
miRNA:   3'- -CGGUGGCGG------UGGUCCGG---UGC-------------CAGCGG- -5'
11461 3' -62.4 NC_003085.1 + 12558 0.77 0.05519
Target:  5'- cGCCGCCGCUgGCCGGGCUgggACGGUgGaCCg -3'
miRNA:   3'- -CGGUGGCGG-UGGUCCGG---UGCCAgC-GG- -5'
11461 3' -62.4 NC_003085.1 + 788 0.76 0.064628
Target:  5'- uGCUGCUgugGCC-CCAGGCCACGGUggacguccgcgugcCGCCg -3'
miRNA:   3'- -CGGUGG---CGGuGGUCCGGUGCCA--------------GCGG- -5'
11461 3' -62.4 NC_003085.1 + 1489 0.76 0.068862
Target:  5'- cGUCACCGUCGCCAgccucGGCCggugcgccucACGGcCGCCa -3'
miRNA:   3'- -CGGUGGCGGUGGU-----CCGG----------UGCCaGCGG- -5'
11461 3' -62.4 NC_003085.1 + 8899 0.75 0.090572
Target:  5'- uGCgCACCGCCACCaAGGCCuug--CGCCu -3'
miRNA:   3'- -CG-GUGGCGGUGG-UCCGGugccaGCGG- -5'
11461 3' -62.4 NC_003085.1 + 44238 0.74 0.100964
Target:  5'- gGCCGCUuCCuGCCGGGCCGC-GUCGCg -3'
miRNA:   3'- -CGGUGGcGG-UGGUCCGGUGcCAGCGg -5'
11461 3' -62.4 NC_003085.1 + 34545 0.73 0.112473
Target:  5'- gGCCGCgagCGCCACCAgccGGCC-CGcGUgCGCCg -3'
miRNA:   3'- -CGGUG---GCGGUGGU---CCGGuGC-CA-GCGG- -5'
11461 3' -62.4 NC_003085.1 + 46692 0.73 0.114302
Target:  5'- cGCCGCCGCUGCCugcuuccGGCCAgCGGaguccuugggcagCGCCu -3'
miRNA:   3'- -CGGUGGCGGUGGu------CCGGU-GCCa------------GCGG- -5'
11461 3' -62.4 NC_003085.1 + 1547 0.73 0.118678
Target:  5'- uCUGCUGUCGCgAGGCCguGCGcGUCGCCu -3'
miRNA:   3'- cGGUGGCGGUGgUCCGG--UGC-CAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.