miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11461 3' -62.4 NC_003085.1 + 338 0.68 0.263819
Target:  5'- cCCGCCGCCAagaaGGGCgGCaaGGgaugagCGCCg -3'
miRNA:   3'- cGGUGGCGGUgg--UCCGgUG--CCa-----GCGG- -5'
11461 3' -62.4 NC_003085.1 + 675 0.66 0.333177
Target:  5'- cGUCGCCgGCCACCugucccgcguccGGCCuCGGgCGCg -3'
miRNA:   3'- -CGGUGG-CGGUGGu-----------CCGGuGCCaGCGg -5'
11461 3' -62.4 NC_003085.1 + 680 0.7 0.180888
Target:  5'- cCCGCgaagaagCGCCGCCAGucGCCACGGggcaacuccgcguggCGCCu -3'
miRNA:   3'- cGGUG-------GCGGUGGUC--CGGUGCCa--------------GCGG- -5'
11461 3' -62.4 NC_003085.1 + 788 0.76 0.064628
Target:  5'- uGCUGCUgugGCC-CCAGGCCACGGUggacguccgcgugcCGCCg -3'
miRNA:   3'- -CGGUGG---CGGuGGUCCGGUGCCA--------------GCGG- -5'
11461 3' -62.4 NC_003085.1 + 986 0.69 0.221796
Target:  5'- cGCCGCCGUguCCaaGGGCUaccaagucaucaACGGUgGCUg -3'
miRNA:   3'- -CGGUGGCGguGG--UCCGG------------UGCCAgCGG- -5'
11461 3' -62.4 NC_003085.1 + 1055 0.74 0.09307
Target:  5'- aGCCAgCGCCGCCgAGGCagacaauGCGGcgcugcUCGCCg -3'
miRNA:   3'- -CGGUgGCGGUGG-UCCGg------UGCC------AGCGG- -5'
11461 3' -62.4 NC_003085.1 + 1489 0.76 0.068862
Target:  5'- cGUCACCGUCGCCAgccucGGCCggugcgccucACGGcCGCCa -3'
miRNA:   3'- -CGGUGGCGGUGGU-----CCGG----------UGCCaGCGG- -5'
11461 3' -62.4 NC_003085.1 + 1547 0.73 0.118678
Target:  5'- uCUGCUGUCGCgAGGCCguGCGcGUCGCCu -3'
miRNA:   3'- cGGUGGCGGUGgUCCGG--UGC-CAGCGG- -5'
11461 3' -62.4 NC_003085.1 + 2097 0.72 0.139251
Target:  5'- aGCCGCCGCaCcUCGGcGCCAuCGG-CGCCc -3'
miRNA:   3'- -CGGUGGCG-GuGGUC-CGGU-GCCaGCGG- -5'
11461 3' -62.4 NC_003085.1 + 2150 0.67 0.318747
Target:  5'- gGCCcCCGCCucaugacguccguGCUGGaagugcgaaacuGCCACGGguUCGCCg -3'
miRNA:   3'- -CGGuGGCGG-------------UGGUC------------CGGUGCC--AGCGG- -5'
11461 3' -62.4 NC_003085.1 + 2318 0.7 0.180888
Target:  5'- uGCC-UCGCCACC-GGCCGCcgcuucaucGGUUGCg -3'
miRNA:   3'- -CGGuGGCGGUGGuCCGGUG---------CCAGCGg -5'
11461 3' -62.4 NC_003085.1 + 2549 0.69 0.216281
Target:  5'- aCCugUGCCGCCu-GCCGCGGUgaCGaCCu -3'
miRNA:   3'- cGGugGCGGUGGucCGGUGCCA--GC-GG- -5'
11461 3' -62.4 NC_003085.1 + 2675 0.68 0.25119
Target:  5'- gGCCACCGUCAUC--GUCGCGGagGCg -3'
miRNA:   3'- -CGGUGGCGGUGGucCGGUGCCagCGg -5'
11461 3' -62.4 NC_003085.1 + 2786 0.68 0.25119
Target:  5'- aGCgGCgGCgCuCCAGGCgGCGGcgaagCGCCu -3'
miRNA:   3'- -CGgUGgCG-GuGGUCCGgUGCCa----GCGG- -5'
11461 3' -62.4 NC_003085.1 + 3001 0.66 0.334723
Target:  5'- aCCGCuCcCCGCUGGGCgCACGGacgaCGCCc -3'
miRNA:   3'- cGGUG-GcGGUGGUCCG-GUGCCa---GCGG- -5'
11461 3' -62.4 NC_003085.1 + 3073 0.68 0.268359
Target:  5'- uGUCACCGCgCACagcgugacgagccgCAGGCCgACGGcggaugaacUUGCCg -3'
miRNA:   3'- -CGGUGGCG-GUG--------------GUCCGG-UGCC---------AGCGG- -5'
11461 3' -62.4 NC_003085.1 + 3230 0.66 0.350476
Target:  5'- uGCCGgCGCUACCuGGgC-CGGcccacacacUCGCCc -3'
miRNA:   3'- -CGGUgGCGGUGGuCCgGuGCC---------AGCGG- -5'
11461 3' -62.4 NC_003085.1 + 3767 0.68 0.245065
Target:  5'- aCCACCccugGCCACCAGacuguggugaGCCAgGGggGCCu -3'
miRNA:   3'- cGGUGG----CGGUGGUC----------CGGUgCCagCGG- -5'
11461 3' -62.4 NC_003085.1 + 3845 0.73 0.1252
Target:  5'- -gCACUGCCcauCCAGGaCCACGGcgCGUCg -3'
miRNA:   3'- cgGUGGCGGu--GGUCC-GGUGCCa-GCGG- -5'
11461 3' -62.4 NC_003085.1 + 4446 0.67 0.283721
Target:  5'- cUCACCGUCGCCGucGGCgCACuguucuccggGGuUCGCCg -3'
miRNA:   3'- cGGUGGCGGUGGU--CCG-GUG----------CC-AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.