miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11462 5' -58.9 NC_003085.1 + 5318 0.66 0.551593
Target:  5'- cGCGaGCgCGUgGCCacgCUGGAGGCGa -3'
miRNA:   3'- -CGCaCGgGCAgUGGca-GGCCUUCGCg -5'
11462 5' -58.9 NC_003085.1 + 15422 0.67 0.451147
Target:  5'- aGCgGUGaguaugCCGUCACCaUCCGGAacgagAGCGg -3'
miRNA:   3'- -CG-CACg-----GGCAGUGGcAGGCCU-----UCGCg -5'
11462 5' -58.9 NC_003085.1 + 17662 0.67 0.441642
Target:  5'- gGUGUGUCCGUCGCgagCGgCCGGGc-CGCu -3'
miRNA:   3'- -CGCACGGGCAGUG---GCaGGCCUucGCG- -5'
11462 5' -58.9 NC_003085.1 + 24106 1.13 0.000229
Target:  5'- gGCGUGCCCGUCACCGUCCGGAAGCGCg -3'
miRNA:   3'- -CGCACGGGCAGUGGCAGGCCUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 2750 0.66 0.530836
Target:  5'- gGCGcUGCCCaaggacucCGCUGgCCGGAAGCagGCa -3'
miRNA:   3'- -CGC-ACGGGca------GUGGCaGGCCUUCG--CG- -5'
11462 5' -58.9 NC_003085.1 + 27777 0.66 0.520563
Target:  5'- aGCGgGCCa--CcUCGUCCuGGAGGCGCu -3'
miRNA:   3'- -CGCaCGGgcaGuGGCAGG-CCUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 35262 0.66 0.510369
Target:  5'- cGCGgGCuuGUCGCaGcCCGGAcgcuggcacaGGUGCa -3'
miRNA:   3'- -CGCaCGggCAGUGgCaGGCCU----------UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 16419 0.66 0.510369
Target:  5'- aGCGU-CCCaaccCACCGaagCCGGuagaGAGCGCg -3'
miRNA:   3'- -CGCAcGGGca--GUGGCa--GGCC----UUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 25118 0.67 0.470486
Target:  5'- cCGU-CCCGUCGCCGUa---GAGCGCc -3'
miRNA:   3'- cGCAcGGGCAGUGGCAggccUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 20980 0.67 0.451147
Target:  5'- cGCGuUGCgCGUCAgcaCGcagCCGGuGAGCGCc -3'
miRNA:   3'- -CGC-ACGgGCAGUg--GCa--GGCC-UUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 22745 0.67 0.451147
Target:  5'- gGCGccGCgCCGUCACCGcCCu---GCGCg -3'
miRNA:   3'- -CGCa-CG-GGCAGUGGCaGGccuuCGCG- -5'
11462 5' -58.9 NC_003085.1 + 7486 0.66 0.500259
Target:  5'- gGCGagGCgUGUCACUG---GGAAGCGCa -3'
miRNA:   3'- -CGCa-CGgGCAGUGGCaggCCUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 8112 0.66 0.548463
Target:  5'- cGCG-GCCCGgccUGCCGUagaaggccaaguccCCGGGcuucGGCGUg -3'
miRNA:   3'- -CGCaCGGGCa--GUGGCA--------------GGCCU----UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 10178 0.67 0.451147
Target:  5'- gGCGaGacaCCGcagCGCCGUagaGGAGGCGCg -3'
miRNA:   3'- -CGCaCg--GGCa--GUGGCAgg-CCUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 38061 0.66 0.530836
Target:  5'- cGCGgcgGUgCGUCAgCCGg-CGGuAGCGCu -3'
miRNA:   3'- -CGCa--CGgGCAGU-GGCagGCCuUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 32466 0.66 0.509354
Target:  5'- cGCGcuuCUCGUCGCCGUcggcgucgcgggcCCGG-AGCGUc -3'
miRNA:   3'- -CGCac-GGGCAGUGGCA-------------GGCCuUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 34272 0.67 0.451147
Target:  5'- cGCG-GCgCUGgcgCACCGgcucagCCGGGccgucAGCGCa -3'
miRNA:   3'- -CGCaCG-GGCa--GUGGCa-----GGCCU-----UCGCG- -5'
11462 5' -58.9 NC_003085.1 + 8415 0.67 0.441642
Target:  5'- cGCGUagcaGCCCGccaaGCCGcCCaGGAGGaCGCc -3'
miRNA:   3'- -CGCA----CGGGCag--UGGCaGG-CCUUC-GCG- -5'
11462 5' -58.9 NC_003085.1 + 14483 0.66 0.530836
Target:  5'- aGCGUGCgCacgagGUCAUCGgcuucCUGuGAGGCGCc -3'
miRNA:   3'- -CGCACG-Gg----CAGUGGCa----GGC-CUUCGCG- -5'
11462 5' -58.9 NC_003085.1 + 1029 0.66 0.51954
Target:  5'- cGCG-GCC--UCGCCGUCCaugcggaGGAAGCcaGCg -3'
miRNA:   3'- -CGCaCGGgcAGUGGCAGG-------CCUUCG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.