miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11470 5' -63.4 NC_003085.1 + 39300 0.66 0.323921
Target:  5'- gGUCCGCCCgGUCCuCGCGguacucCCCGccGCGc -3'
miRNA:   3'- -CAGGUGGG-CAGG-GCGU------GGGCcaCGCa -5'
11470 5' -63.4 NC_003085.1 + 43855 0.66 0.323921
Target:  5'- cGUCCACCaccgCGUCacucagcaucguCCGCACCaGG-GCGUa -3'
miRNA:   3'- -CAGGUGG----GCAG------------GGCGUGGgCCaCGCA- -5'
11470 5' -63.4 NC_003085.1 + 44190 0.66 0.316441
Target:  5'- cUUCGCCCGUgcucgcguacugCCgCGCGCCCGcaGCGUc -3'
miRNA:   3'- cAGGUGGGCA------------GG-GCGUGGGCcaCGCA- -5'
11470 5' -63.4 NC_003085.1 + 38656 0.66 0.316441
Target:  5'- -gCCGCCUccaGUggcaCUCGCACCCGGcUGUGUu -3'
miRNA:   3'- caGGUGGG---CA----GGGCGUGGGCC-ACGCA- -5'
11470 5' -63.4 NC_003085.1 + 27710 0.66 0.301875
Target:  5'- cGUCCGCCCGcUgUCGCGCCuCGuUGCu- -3'
miRNA:   3'- -CAGGUGGGC-AgGGCGUGG-GCcACGca -5'
11470 5' -63.4 NC_003085.1 + 18954 0.66 0.287831
Target:  5'- -gCCuCCUGUCCUGCAUCUGGcUGuCGUc -3'
miRNA:   3'- caGGuGGGCAGGGCGUGGGCC-AC-GCA- -5'
11470 5' -63.4 NC_003085.1 + 12330 0.66 0.287831
Target:  5'- -cCCG-CCGUCgCCGUGCCCGGcGUGa -3'
miRNA:   3'- caGGUgGGCAG-GGCGUGGGCCaCGCa -5'
11470 5' -63.4 NC_003085.1 + 8671 0.67 0.267737
Target:  5'- uUCaGCCCGUCCgCGCGCgaCGcGUGCGc -3'
miRNA:   3'- cAGgUGGGCAGG-GCGUGg-GC-CACGCa -5'
11470 5' -63.4 NC_003085.1 + 12158 0.67 0.25498
Target:  5'- cGUgUACCCGcUgCGCACCgcaGGUGCGUc -3'
miRNA:   3'- -CAgGUGGGCaGgGCGUGGg--CCACGCA- -5'
11470 5' -63.4 NC_003085.1 + 19921 0.67 0.254355
Target:  5'- cGUCCugCCGcacgacgCCCGCGCCaagacgcUGGUGaCGg -3'
miRNA:   3'- -CAGGugGGCa------GGGCGUGG-------GCCAC-GCa -5'
11470 5' -63.4 NC_003085.1 + 770 0.67 0.248791
Target:  5'- aGUCCGCCaCG-CCgCGCAa-CGGUGCGc -3'
miRNA:   3'- -CAGGUGG-GCaGG-GCGUggGCCACGCa -5'
11470 5' -63.4 NC_003085.1 + 36898 0.67 0.248791
Target:  5'- gGUCCA-CCGUCCCa-GCCCGGccaGCGg -3'
miRNA:   3'- -CAGGUgGGCAGGGcgUGGGCCa--CGCa -5'
11470 5' -63.4 NC_003085.1 + 29743 0.68 0.230967
Target:  5'- -gCUGCCCGUCUCGUGCUCgaaGGUGCa- -3'
miRNA:   3'- caGGUGGGCAGGGCGUGGG---CCACGca -5'
11470 5' -63.4 NC_003085.1 + 40417 0.68 0.208889
Target:  5'- -aCCugCCG-CCCGUgcaGCCgCGGUGUGg -3'
miRNA:   3'- caGGugGGCaGGGCG---UGG-GCCACGCa -5'
11470 5' -63.4 NC_003085.1 + 15280 0.68 0.208889
Target:  5'- -cUCACCCGccgcgCCCGCgucaugcugGCCCGGgGCGUc -3'
miRNA:   3'- caGGUGGGCa----GGGCG---------UGGGCCaCGCA- -5'
11470 5' -63.4 NC_003085.1 + 38629 0.69 0.203145
Target:  5'- cUCgCAUCCcacUCCCGCagucgcuGCCCGGUGCGc -3'
miRNA:   3'- cAG-GUGGGc--AGGGCG-------UGGGCCACGCa -5'
11470 5' -63.4 NC_003085.1 + 5577 0.69 0.193546
Target:  5'- gGUgCGCCaCGUCUaCGC-CCUGGUGCGg -3'
miRNA:   3'- -CAgGUGG-GCAGG-GCGuGGGCCACGCa -5'
11470 5' -63.4 NC_003085.1 + 27882 0.69 0.1792
Target:  5'- uGUCgGCCaugCCCGuCACCUGGUGCa- -3'
miRNA:   3'- -CAGgUGGgcaGGGC-GUGGGCCACGca -5'
11470 5' -63.4 NC_003085.1 + 40942 0.69 0.1792
Target:  5'- -aCCGCCUucgCCUGCGCCCgcuGGUGCGc -3'
miRNA:   3'- caGGUGGGca-GGGCGUGGG---CCACGCa -5'
11470 5' -63.4 NC_003085.1 + 21151 0.7 0.157381
Target:  5'- --aCGCCCGUCCCaccgcGCACCUGcUGCGa -3'
miRNA:   3'- cagGUGGGCAGGG-----CGUGGGCcACGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.