miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11471 3' -59.6 NC_003085.1 + 23662 0.66 0.4739
Target:  5'- -aUGGCAGGCcacuccuucagcGGCGUCCCCa -3'
miRNA:   3'- cgACCGUCCGcaaccu------CCGUAGGGGg -5'
11471 3' -59.6 NC_003085.1 + 95 0.66 0.470928
Target:  5'- uCUaGCAGGaCGgcGGAcgGGCGgcgggCCCCCa -3'
miRNA:   3'- cGAcCGUCC-GCaaCCU--CCGUa----GGGGG- -5'
11471 3' -59.6 NC_003085.1 + 29160 0.66 0.470928
Target:  5'- aGgUGGCGGGCGcgUUGGgcacggccuuGGGCuUCgCCUCa -3'
miRNA:   3'- -CgACCGUCCGC--AACC----------UCCGuAG-GGGG- -5'
11471 3' -59.6 NC_003085.1 + 38679 0.66 0.470928
Target:  5'- cGCUGcGCGGaaGa-GGuGGCAUgCCCCCa -3'
miRNA:   3'- -CGAC-CGUCcgCaaCCuCCGUA-GGGGG- -5'
11471 3' -59.6 NC_003085.1 + 37899 0.66 0.461093
Target:  5'- cGCgGGCAGgacgguGCGUUGGc-GCAggCCCCg -3'
miRNA:   3'- -CGaCCGUC------CGCAACCucCGUagGGGG- -5'
11471 3' -59.6 NC_003085.1 + 1802 0.66 0.451367
Target:  5'- cGUUGGCuGGCcg-GGAcuGGUgcgCCCCCu -3'
miRNA:   3'- -CGACCGuCCGcaaCCU--CCGua-GGGGG- -5'
11471 3' -59.6 NC_003085.1 + 12710 0.66 0.441755
Target:  5'- gGCgaGGCcGGCGgccgaggGGAGGUAgcgcauaCCCCg -3'
miRNA:   3'- -CGa-CCGuCCGCaa-----CCUCCGUag-----GGGG- -5'
11471 3' -59.6 NC_003085.1 + 884 0.66 0.422884
Target:  5'- --cGGCGguGGCGUccGaGGGGCAUCCCgugCCa -3'
miRNA:   3'- cgaCCGU--CCGCAa-C-CUCCGUAGGG---GG- -5'
11471 3' -59.6 NC_003085.1 + 1324 0.67 0.4036
Target:  5'- gGCUGGCAcugcgauGGCGcUGGAguacggacGGCuUCCgCCu -3'
miRNA:   3'- -CGACCGU-------CCGCaACCU--------CCGuAGGgGG- -5'
11471 3' -59.6 NC_003085.1 + 5610 0.67 0.395507
Target:  5'- ---uGCAGGUGUUGGAGGaggagaacgCCCgCCu -3'
miRNA:   3'- cgacCGUCCGCAACCUCCgua------GGG-GG- -5'
11471 3' -59.6 NC_003085.1 + 19334 0.67 0.386639
Target:  5'- uGCUGGgGccGGCGgcGGAuGGCGUCCgUg -3'
miRNA:   3'- -CGACCgU--CCGCaaCCU-CCGUAGGgGg -5'
11471 3' -59.6 NC_003085.1 + 4423 0.67 0.377904
Target:  5'- aGgaGGCuGGCGacUGGcAGaGCAUCCCUg -3'
miRNA:   3'- -CgaCCGuCCGCa-ACC-UC-CGUAGGGGg -5'
11471 3' -59.6 NC_003085.1 + 20433 0.67 0.377904
Target:  5'- cGCUGGCAGGa---GGAGaUGUCCgCCg -3'
miRNA:   3'- -CGACCGUCCgcaaCCUCcGUAGGgGG- -5'
11471 3' -59.6 NC_003085.1 + 34952 0.67 0.369301
Target:  5'- uGCUGGCcGGC---GGAGGCG-CCUCa -3'
miRNA:   3'- -CGACCGuCCGcaaCCUCCGUaGGGGg -5'
11471 3' -59.6 NC_003085.1 + 20199 0.67 0.369301
Target:  5'- uGCUGGCcgaauucggacuGGGCGUUgcGGuAGGCcucgcugCCCUCg -3'
miRNA:   3'- -CGACCG------------UCCGCAA--CC-UCCGua-----GGGGG- -5'
11471 3' -59.6 NC_003085.1 + 21815 0.67 0.369301
Target:  5'- cGgUGGCGaugcGGCGUcccgcUGGcGGCGagCCCCCc -3'
miRNA:   3'- -CgACCGU----CCGCA-----ACCuCCGUa-GGGGG- -5'
11471 3' -59.6 NC_003085.1 + 9060 0.67 0.369301
Target:  5'- gGC-GGCAGGUG-UGGuGGUucggCCCCa -3'
miRNA:   3'- -CGaCCGUCCGCaACCuCCGua--GGGGg -5'
11471 3' -59.6 NC_003085.1 + 43626 0.68 0.352503
Target:  5'- uGCaGaGCGGGCacgGGAGGCcAUCCgCCu -3'
miRNA:   3'- -CGaC-CGUCCGcaaCCUCCG-UAGGgGG- -5'
11471 3' -59.6 NC_003085.1 + 35003 0.68 0.34431
Target:  5'- uGCUGGCcgAGGCucUGGAGGCAaggaagaagCCCa- -3'
miRNA:   3'- -CGACCG--UCCGcaACCUCCGUa--------GGGgg -5'
11471 3' -59.6 NC_003085.1 + 49295 0.68 0.336254
Target:  5'- uGCUGcgucGCGucGGCGUcccgGGAGGCGaCCuCCCa -3'
miRNA:   3'- -CGAC----CGU--CCGCAa---CCUCCGUaGG-GGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.