miRNA display CGI


Results 21 - 40 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11479 3' -59.1 NC_003085.1 + 31647 0.76 0.098229
Target:  5'- gGCCUGCCgCAcaggcggCACCggggCGGGCGGUGg -3'
miRNA:   3'- aCGGACGG-GUa------GUGGa---GCCUGCCACg -5'
11479 3' -59.1 NC_003085.1 + 27406 0.71 0.245224
Target:  5'- gGCCuUGUCCAacaCGCCUUcGAUGGUGCu -3'
miRNA:   3'- aCGG-ACGGGUa--GUGGAGcCUGCCACG- -5'
11479 3' -59.1 NC_003085.1 + 5709 0.68 0.388729
Target:  5'- aGCCcgcGCCCAcCACCggggCGGACccggcucgGGUGUc -3'
miRNA:   3'- aCGGa--CGGGUaGUGGa---GCCUG--------CCACG- -5'
11479 3' -59.1 NC_003085.1 + 33084 0.68 0.388729
Target:  5'- cUGCCaacuuUGCCCG-CGCCU-GGAaugccuCGGUGCc -3'
miRNA:   3'- -ACGG-----ACGGGUaGUGGAgCCU------GCCACG- -5'
11479 3' -59.1 NC_003085.1 + 31056 0.67 0.397653
Target:  5'- gGCCaGUCgCuUCGCCUCGG--GGUGCg -3'
miRNA:   3'- aCGGaCGG-GuAGUGGAGCCugCCACG- -5'
11479 3' -59.1 NC_003085.1 + 44247 0.71 0.232983
Target:  5'- cUGCCggGCCgCGUCGCgCUCGGAcuCGGccUGCc -3'
miRNA:   3'- -ACGGa-CGG-GUAGUG-GAGCCU--GCC--ACG- -5'
11479 3' -59.1 NC_003085.1 + 25816 0.72 0.21559
Target:  5'- gGCCUG-CCAUCACCcgcgCGGA-GGUGg -3'
miRNA:   3'- aCGGACgGGUAGUGGa---GCCUgCCACg -5'
11479 3' -59.1 NC_003085.1 + 47954 0.66 0.473523
Target:  5'- cUGCCUcuuGCCCGagCGCC--GGACGGgccGCg -3'
miRNA:   3'- -ACGGA---CGGGUa-GUGGagCCUGCCa--CG- -5'
11479 3' -59.1 NC_003085.1 + 16672 0.66 0.473523
Target:  5'- gGCgCUGCCUGUCgACCUgcuacacgcaGGGCGGggGCu -3'
miRNA:   3'- aCG-GACGGGUAG-UGGAg---------CCUGCCa-CG- -5'
11479 3' -59.1 NC_003085.1 + 27943 0.66 0.473523
Target:  5'- gGaCUUGCCCAUCuaCUCGuccGCGGUGUg -3'
miRNA:   3'- aC-GGACGGGUAGugGAGCc--UGCCACG- -5'
11479 3' -59.1 NC_003085.1 + 20758 0.69 0.330046
Target:  5'- gGCugCUGCCCG--GCUUCGGGCuGUGCc -3'
miRNA:   3'- aCG--GACGGGUagUGGAGCCUGcCACG- -5'
11479 3' -59.1 NC_003085.1 + 8178 0.69 0.314525
Target:  5'- gUGCUUGCgCAgCGCUUCGGcgucuCGGUGUc -3'
miRNA:   3'- -ACGGACGgGUaGUGGAGCCu----GCCACG- -5'
11479 3' -59.1 NC_003085.1 + 11576 0.69 0.306974
Target:  5'- cGuCCUGCCCG-CGCCUggcUGGaACGGgGCa -3'
miRNA:   3'- aC-GGACGGGUaGUGGA---GCC-UGCCaCG- -5'
11479 3' -59.1 NC_003085.1 + 45748 0.7 0.292289
Target:  5'- cUGCCUGCgUCGUCACCaccagcacCGGACGcG-GCg -3'
miRNA:   3'- -ACGGACG-GGUAGUGGa-------GCCUGC-CaCG- -5'
11479 3' -59.1 NC_003085.1 + 29655 0.71 0.232983
Target:  5'- cGCCUGCCCAcagaagUCAUgUCGGGCGu--- -3'
miRNA:   3'- aCGGACGGGU------AGUGgAGCCUGCcacg -5'
11479 3' -59.1 NC_003085.1 + 12770 0.67 0.434631
Target:  5'- gGCCuggggugaUGCCCcugcCGCCguugUCGGGCaGGUGCu -3'
miRNA:   3'- aCGG--------ACGGGua--GUGG----AGCCUG-CCACG- -5'
11479 3' -59.1 NC_003085.1 + 44087 0.66 0.452879
Target:  5'- cGCC-GUCCAUCGCCgCGGccagccgACGGaaUGCc -3'
miRNA:   3'- aCGGaCGGGUAGUGGaGCC-------UGCC--ACG- -5'
11479 3' -59.1 NC_003085.1 + 25162 0.66 0.453851
Target:  5'- gGCCgGCgaCCGUgGCCUgGuGGCGGUGg -3'
miRNA:   3'- aCGGaCG--GGUAgUGGAgC-CUGCCACg -5'
11479 3' -59.1 NC_003085.1 + 25023 0.66 0.463632
Target:  5'- cGCCgcuggGCaCCAUCACCcgcgcgaaGGAccCGGUGUu -3'
miRNA:   3'- aCGGa----CG-GGUAGUGGag------CCU--GCCACG- -5'
11479 3' -59.1 NC_003085.1 + 43805 0.66 0.463632
Target:  5'- aGCgUGUCCGUCAUCUUGucguagcCGGUGUu -3'
miRNA:   3'- aCGgACGGGUAGUGGAGCcu-----GCCACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.