miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11479 3' -59.1 NC_003085.1 + 48519 0.7 0.278159
Target:  5'- gGCCUGUCUggCACC-CGGACGcG-GCc -3'
miRNA:   3'- aCGGACGGGuaGUGGaGCCUGC-CaCG- -5'
11479 3' -59.1 NC_003085.1 + 47954 0.66 0.473523
Target:  5'- cUGCCUcuuGCCCGagCGCC--GGACGGgccGCg -3'
miRNA:   3'- -ACGGA---CGGGUa-GUGGagCCUGCCa--CG- -5'
11479 3' -59.1 NC_003085.1 + 46459 0.7 0.278159
Target:  5'- aGCacccagaGUCCAUCACCaaGGGCGGUGa -3'
miRNA:   3'- aCGga-----CGGGUAGUGGagCCUGCCACg -5'
11479 3' -59.1 NC_003085.1 + 46200 0.66 0.463632
Target:  5'- gGCUccaUGCCCGcUCAUggCGGGCGaGUGUg -3'
miRNA:   3'- aCGG---ACGGGU-AGUGgaGCCUGC-CACG- -5'
11479 3' -59.1 NC_003085.1 + 45959 0.68 0.379938
Target:  5'- aGCUUGUacagCGUCGCCUUGGgGCGGcagaUGCg -3'
miRNA:   3'- aCGGACGg---GUAGUGGAGCC-UGCC----ACG- -5'
11479 3' -59.1 NC_003085.1 + 45748 0.7 0.292289
Target:  5'- cUGCCUGCgUCGUCACCaccagcacCGGACGcG-GCg -3'
miRNA:   3'- -ACGGACG-GGUAGUGGa-------GCCUGC-CaCG- -5'
11479 3' -59.1 NC_003085.1 + 44247 0.71 0.232983
Target:  5'- cUGCCggGCCgCGUCGCgCUCGGAcuCGGccUGCc -3'
miRNA:   3'- -ACGGa-CGG-GUAGUG-GAGCCU--GCC--ACG- -5'
11479 3' -59.1 NC_003085.1 + 44087 0.66 0.452879
Target:  5'- cGCC-GUCCAUCGCCgCGGccagccgACGGaaUGCc -3'
miRNA:   3'- aCGGaCGGGUAGUGGaGCC-------UGCC--ACG- -5'
11479 3' -59.1 NC_003085.1 + 43805 0.66 0.463632
Target:  5'- aGCgUGUCCGUCAUCUUGucguagcCGGUGUu -3'
miRNA:   3'- aCGgACGGGUAGUGGAGCcu-----GCCACG- -5'
11479 3' -59.1 NC_003085.1 + 42536 0.71 0.232385
Target:  5'- gGCCU-CCCGcuUCGCCUCGGccagcgcGCGG-GCg -3'
miRNA:   3'- aCGGAcGGGU--AGUGGAGCC-------UGCCaCG- -5'
11479 3' -59.1 NC_003085.1 + 41363 0.67 0.403071
Target:  5'- gGCCggGCCgCGUCACCcacgucaugacggUGGugGGUGa -3'
miRNA:   3'- aCGGa-CGG-GUAGUGGa------------GCCugCCACg -5'
11479 3' -59.1 NC_003085.1 + 40556 0.69 0.306974
Target:  5'- cGUCgagGCgCAagGCCUUGGugGCGGUGCg -3'
miRNA:   3'- aCGGa--CGgGUagUGGAGCC--UGCCACG- -5'
11479 3' -59.1 NC_003085.1 + 38104 0.7 0.278159
Target:  5'- cGCCgccaCCAUCGUCUCGGA-GGUGCc -3'
miRNA:   3'- aCGGacg-GGUAGUGGAGCCUgCCACG- -5'
11479 3' -59.1 NC_003085.1 + 37876 0.69 0.336411
Target:  5'- cGcCCUGCCCcguUCcaGCCaggcgcgggcaGGACGGUGCg -3'
miRNA:   3'- aC-GGACGGGu--AG--UGGag---------CCUGCCACG- -5'
11479 3' -59.1 NC_003085.1 + 37130 0.69 0.314525
Target:  5'- cGCgUGCCC-UUGCCcagguUCGGGuCGGUGUg -3'
miRNA:   3'- aCGgACGGGuAGUGG-----AGCCU-GCCACG- -5'
11479 3' -59.1 NC_003085.1 + 34494 0.76 0.101011
Target:  5'- cGCCU-CCCAgggCACCaCGGACGcGUGCg -3'
miRNA:   3'- aCGGAcGGGUa--GUGGaGCCUGC-CACG- -5'
11479 3' -59.1 NC_003085.1 + 33084 0.68 0.388729
Target:  5'- cUGCCaacuuUGCCCG-CGCCU-GGAaugccuCGGUGCc -3'
miRNA:   3'- -ACGG-----ACGGGUaGUGGAgCCU------GCCACG- -5'
11479 3' -59.1 NC_003085.1 + 32539 0.66 0.473523
Target:  5'- gGCCuUGCCCu---CCaCGGGCGGggGCu -3'
miRNA:   3'- aCGG-ACGGGuaguGGaGCCUGCCa-CG- -5'
11479 3' -59.1 NC_003085.1 + 31647 0.76 0.098229
Target:  5'- gGCCUGCCgCAcaggcggCACCggggCGGGCGGUGg -3'
miRNA:   3'- aCGGACGG-GUa------GUGGa---GCCUGCCACg -5'
11479 3' -59.1 NC_003085.1 + 31056 0.67 0.397653
Target:  5'- gGCCaGUCgCuUCGCCUCGG--GGUGCg -3'
miRNA:   3'- aCGGaCGG-GuAGUGGAGCCugCCACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.